UFO11337.5prime Sequence
1066 bp (964 high quality bases) assembled on 2012-04-23
> UFO11337.5prime
CAGTCGACATGTTAGCGAACGGACAGCAAACAAAGTCGTTGGCCAGTGGG
CTTCTTCTCCTACTGGGCATATGCCGAATATCCGGAGTGGCTATCGGCGC
ACCCGAGGGGCGTGTCGTGGGTGGATCTCCGGCAGCGGTGAATAGTGCTC
CCTATGCGGTGTCCATGCAGTACGGTGGCACCCATTACTGTGCCGCCAGC
ATTCTGAATGCCAACTGGCTAGTCACCGCTGCCCACTGCCTGACCAATAG
TAACCAGGTGCTGGGCAGCACCTTGGTGGCCGGAAGCATCGCGGTGGACG
GAACTGCAAGCACTACGCAGACGCGGAGCATCACGTACTTCGTGATCAAT
GACTTGTACACCGGCGGAACTGTGCCCTATGACATCGGAATGATCTACAC
GCCCACCGCCTTCGTTTGGAGCGCCGCCGTTGCCCCAGTGACGCTACCAT
CCTCGGGAGTGGTGCCCACTGGCACCGCCAATCTGTACGGATGGGGCAGC
ACTAGCACCACGAATACCGCCTCCTATCCGTCGACCCTGCAGGTGGCCAC
CAATGTGCCTATCATTTCGCTGAGCTCCTGCGAAAGCGCCCTGGGCACCA
AGGGCAGCGATGTCCACTCGACCAATCTGTGCACTGGTCCTCTAACTGGC
GGCGTTAGCATTTGCACCTCGGATTCGGGAGGACCACTGGTCCAGGGCAA
TGTCCTTATTGGCATCGTGTCCTGGGGCAAGTTACCTTGTGGTCAGGCCA
ACTCACCGTCGGTTTACGTGCAGGTCTCGTCGTTTATATCGTGGATATCG
GCTAACCAGCATGTGTCCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCG
GGCCCAGGTAAGTGGTATAATCATAATCATATCATAATCATAATCACACT
AGCCTAGGAGATCCTGGTTCATGACTTGGGCTTGGATTCCTCACCAATAA
AAACGCCCCGGCGGCACCGGAGCGGTTCTGAACAATCAGATGGAGTTCTG
AGTCATTACTGATCTTTTCACGGGATCTAGCGAGCTCGAATATCATTACG
CCCGCCTGTCCACCCA
UFO11337.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:37:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Phae1-RB | 1248 | CG16996-RB | 227..1036 | 9..818 | 4020 | 99.8 | Plus |
| Phae1-RA | 904 | CG16996-RA | 25..834 | 9..818 | 4020 | 99.8 | Plus |
| Phae2-RC | 1147 | CG16997-RC | 119..826 | 101..808 | 1080 | 77.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:37:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12109643..12110452 | 9..818 | 4020 | 99.8 | Plus |
| 2L | 23513712 | 2L | 12111228..12111935 | 101..808 | 1065 | 76.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:37:19 has no hits.
UFO11337.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-23 10:28:17 Download gff for
UFO11337.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16996-RA | 187..999 | 9..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:22:20 Download gff for
UFO11337.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Phae1-RA | 187..999 | 9..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:34:33 Download gff for
UFO11337.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Phae1-RA | 25..837 | 9..822 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:34:33 Download gff for
UFO11337.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12109643..12110455 | 9..822 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:22:20 Download gff for
UFO11337.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12109643..12110455 | 9..822 | 99 | == | Plus |
