UFO11339.5prime Sequence
1150 bp (1004 high quality bases) assembled on 2012-04-23
> UFO11339.5prime
CAGTCGACATGGAAGAACTGAACATCATATTACAGAAGACCAAAGATAAA
TCAACGCAAAAGGAGCAGGATGAGATTCTGCTGCAGCCCTTTACATACAT
ACAACAGATTCCTGGCAAGCAATTCCGCTCTGAGTTGGCCTTGGCCTTCA
ATCACTGGTTGCTCATACCGGGCGAAAAGTTGGCGCAGATCGGAGACATT
GTGCAGATGCTGCACAATTCCAGTTTGCTCATTGATGATATTGAAGACAA
TTCGATCCTTCGCAGAGGTGTGCCCGTGGCGCATTCCATCTACGGCGTGG
CCAGCACCATAAATGCGGCCAACTATGCACTCTTTCTGGCGCTGGAGAAG
GTGCAGCAGCTGGATCATCCGGAGGCTACCAAGGTGTACACCGAACAATT
GCTGGAGCTGCACCGTGGACAGGGCATGGAGATCTATTGGCGCGACAGCT
TCACGTGTCCATCCGAGTCGGATTACAAGCTGATGACTGTGCGCAAAACT
GGCGGCCTCTTTATGCTGGCCATTCGCCTTATGCAGCTGTTCAGCTCCAA
CAAGGAGGACTATTCGAAGTTGACGGCTATATTGGGCCTGTACTTTCAGA
TACGCGACGACTATTGCAATCTGAGTCTGAAAGAGTACACGGAGAACAAG
AGCTTCGCCGAGGACTTGACGGAGGGCAAGTTCGGCTTCCCGGTAATCCA
TGCGGTTCGCACCCAAAAGCAGGATAAACAGGTTCTACACATATTACGCC
AGCGCACGCACGACATTGAGGTCAAGAAGTACTGCATCACCTTGTTGGAA
AAGCTGGGCAGCTTTCAGTATACACGCAAGGTTCTGGAGTCGCTCGACGC
AGAGGCTCGGTCGGAGGTGGCTCGTTTGGGTAGCAATCCGTACATGGACC
GCCTGCTCAACAAGCTGCTGTCGTGTAAGACGAGCGATAGCGCCAGCATC
ACGCAGTCGAACCAGATCAATCACAACAACGTCTCACGCAGCAGCCCCAA
CAGAACCCGCCTCAATTGCCATGCAAGCTTTCTAGACCATTCGTTTGGCC
GCGCGGGCCCCAGGTAGTGGTCAATATCATATCATAATCATATCATAATT
CCACACTGCCCTAGAGATCCTGTAGAACATGCCTGATCCACAATAAAAAG
UFO11339.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:37:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| qm-RB | 2543 | CG8593-RB | 298..1308 | 9..1019 | 4980 | 99.6 | Plus |
| qm-RA | 1934 | CG8593-RA | 298..1308 | 9..1019 | 4980 | 99.6 | Plus |
| qm-RC | 2507 | CG8593-RC | 519..1272 | 266..1019 | 3695 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:37:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7351465..7351727 | 373..635 | 1315 | 100 | Plus |
| 3L | 28110227 | 3L | 7348861..7349017 | 73..229 | 785 | 100 | Plus |
| 3L | 28110227 | 3L | 7351269..7351414 | 230..375 | 730 | 100 | Plus |
| 3L | 28110227 | 3L | 7352233..7352369 | 865..1001 | 670 | 99.3 | Plus |
| 3L | 28110227 | 3L | 7351971..7352100 | 739..868 | 650 | 100 | Plus |
| 3L | 28110227 | 3L | 7351793..7351897 | 634..738 | 525 | 100 | Plus |
| 3L | 28110227 | 3L | 7348610..7348675 | 9..74 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:37:23 has no hits.
UFO11339.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-23 10:28:18 Download gff for
UFO11339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qm-RB | 288..1309 | 1..1022 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:22:22 Download gff for
UFO11339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qm-RA | 290..1311 | 1..1022 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:34:34 Download gff for
UFO11339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qm-RA | 290..1311 | 1..1022 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:34:34 Download gff for
UFO11339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7348602..7348675 | 1..74 | 94 | -> | Plus |
| 3L | 7348863..7349017 | 75..229 | 100 | -> | Plus |
| 3L | 7351269..7351413 | 230..374 | 100 | -> | Plus |
| 3L | 7351467..7351727 | 375..635 | 100 | -> | Plus |
| 3L | 7351795..7351897 | 636..738 | 100 | -> | Plus |
| 3L | 7351971..7352098 | 739..866 | 100 | -> | Plus |
| 3L | 7352235..7352390 | 867..1022 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:22:22 Download gff for
UFO11339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7341702..7341775 | 1..74 | 94 | -> | Plus |
| arm_3L | 7341963..7342117 | 75..229 | 100 | -> | Plus |
| arm_3L | 7344369..7344513 | 230..374 | 100 | -> | Plus |
| arm_3L | 7344567..7344827 | 375..635 | 100 | -> | Plus |
| arm_3L | 7344895..7344997 | 636..738 | 100 | -> | Plus |
| arm_3L | 7345071..7345198 | 739..866 | 100 | -> | Plus |
| arm_3L | 7345335..7345490 | 867..1022 | 96 | | Plus |
