UFO11340.5prime Sequence
1119 bp (998 high quality bases) assembled on 2012-04-23
> UFO11340.5prime
CAGTCGACATGAAAGACGCAAAGCCCTTTCCCGTGCTCAAGAATGATAAC
CTGCTGCGCGCCGCACGTGGCGAGGTGGTGGACCGGGTGCCTGTTTGGGT
GATGCGCCAAGCGGGGCGCTACCTGCCGGAGTTCCAGGAGCTGCGAAAGC
ACCACGACTTCTTCACCGTCTGCCGCACCCCGGAGCTAGCGTGCGAAGTG
ACCATGCAGCCATTGCGCCGCTTCGACCTGGACGCCTCCATAATTTTTTC
GGACATCCTTGTCATTCCCCAAGCACTCGGCCTCACCGTGGAGATGCACG
CGGGCGTTGGTCCCGTTCTGCCACAGCCCATCGTGGTGCCGGAGGACCTC
AAGCGCCTGACGCCGGACGGAGCCTTGTCCCGCCTCAGCTACGTGGGCGA
CGCAATCACCATGATGCGGCACAAGCTCGAAGGTCGAGTGCCGCTAATCG
GCTTTACAGGAGCGCCGTGGACACTAATGGGATATATGATCGAGGGCGGT
GGGAGCAAGACCATGTCGAAAGCTAAAGCTTGGCTCAACGAACATCCTGA
GGACTCTAAGCTGTTCCTGAACCTGCTGACCGACGCAATTGTGGACTACC
TGGAGATGCAGGTGAAAGCTGGCGCTCAAATGCTGCAGGTATTCGAATCG
TCCGCCGAGCATCTCTCCAAGGAGCAGTTCCTGCAGTGGTGTGTACCCTA
CCTGAAGAGAATACGCGACGAGCTGGTGGACCGTCTCACAAAGAAGGCCA
TCCCCGTGGTTCCCATGACGCTGTTCGCTAAGGGTGCTGGGCACTCGCTG
AAGAGCAGAGCGAACTGGGCTACGACGTTTATTGGCTTGGATTGGACTGT
GGATCCGCTGGGAGGCACGCATTTTGGTCGGACCGAACATTACGTTGCAA
GGCAACTTGGATCCTCAGGACATGTACCGCGATCCTGATGAGCTGCGCAA
CCTGACCACAGAAATGGTGCACAAGTTCGGCAAGTCGCGCTACATCGCCA
TTCTGGGACATGAATCCCGCCCTCAAACTCGATCACGAGCATGAATGCCT
GGTGAGCGTGCACAGCTCTGCAGCTTCCTAGAACATCCGTTGCCGCGCGT
CCAAGTTAGTGTAATTACT
UFO11340.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:37:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Updo-RA | 1299 | CG1818-RA | 145..1179 | 9..1043 | 4950 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:37:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9584926..9585671 | 22..767 | 3700 | 99.7 | Plus |
| 2R | 25286936 | 2R | 9585730..9586006 | 767..1043 | 1060 | 95.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:37:27 has no hits.
UFO11340.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-23 10:28:19 Download gff for
UFO11340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Updo-RA | 113..1167 | 1..1054 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:22:25 Download gff for
UFO11340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Updo-RA | 137..1191 | 1..1054 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:34:37 Download gff for
UFO11340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Updo-RA | 137..1191 | 1..1054 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:34:37 Download gff for
UFO11340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9584928..9585671 | 24..767 | 99 | -> | Plus |
| 2R | 9585731..9586018 | 768..1054 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:22:25 Download gff for
UFO11340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5472433..5473176 | 24..767 | 99 | -> | Plus |
| arm_2R | 5473236..5473523 | 768..1054 | 95 | | Plus |
