UFO11342.5prime Sequence
1124 bp (982 high quality bases) assembled on 2012-04-23
> UFO11342.5prime
CAGTCGACATGAGTTTCATTAACGGCTTCAAAAGATTCGCCACAACGACG
GTTGGTCTGATGGCCATCGGTATTGGATCGACTGTTATATTCTACACCAC
CCATCGCCTTGTCATCAAACCCTATCTTCTCGAGAAACGACGCCTGGAAG
CCGAGGCCAGTGCGGAGTACCTCTTCCAGCAGGAGGTTCACTCCCAGATT
GGCGAGTCAAGACCCAAACGGAGCGAATATGCAAGCTTTCTAGACCATTC
GTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATA
ATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGA
TTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATC
CAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCG
AGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTG
TAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGAT
GAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATAT
TTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTT
TAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACA
TATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACAC
GCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTA
TTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGT
AACAAGGGTGAACACTATCCCATATCACCAGCTCACCGTTCTTTCATTGC
CATACGAATTCCGGATGAGCATTCATCAGGGGCCAGATGTGATAAAGCCC
GATAACTTGTGCTTTTTTTTTTTACGTCTTTAAAGCGTAATATCAGCTGA
ACGGTCTGGTATAGTACTGACACTGACTGAATGCCTCAATGTCTACGATG
CATGGGAATTATCACGTGATATCAGTGATTTTTCTCCATTAGCTCTAGTC
TGAGATCCATACTCGATGCATACT
UFO11342.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:37:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34310-RD | 4306 | CG34310-RD | 3827..4048 | 9..230 | 1110 | 100 | Plus |
| CG34310-RA | 706 | CG34310-RA | 266..487 | 9..230 | 1110 | 100 | Plus |
| CG34310-RC | 4002 | CG34310-RC | 3523..3744 | 9..230 | 1110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:37:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6674301..6674522 | 9..230 | 1110 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 02:37:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 799..866 | 123 | 68.1 | Plus |
UFO11342.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-23 10:28:20 Download gff for
UFO11342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cup-RB | 3518..3752 | 1..236 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:22:29 Download gff for
UFO11342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cup-RB | 3515..3749 | 1..236 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:34:40 Download gff for
UFO11342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34310-RC | 3515..3749 | 1..236 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 03:34:40 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 21:22:29 has no hits.
