UFO11344.5prime Sequence
1129 bp (989 high quality bases) assembled on 2012-04-23
> UFO11344.5prime
CAGTCGACATGCGTAAGACGTGGGTGAAGCGAGAGAATATATACTTCAAG
CCCTTCTACAAGCAGAAGTCGAAGATGTTCCTGCTGCTGATCTTCCTGGT
CGGAATTTCGTTCATCGCGTATCAGGCCTTCTCGCTGAACCAGCTGCCCG
GAGTGCCTGCTCCGTGGAATCTGCAGCAGATCAAGCGCAAGCACCAGCAG
ATGATGCAGTCCCTGGGCAGCAAACAGCGCGACGTGGACGATTTCGATGG
CGGAGGCGCCGATGCAGTTGCTCCGGCAGGCGGGGAAACCTCACCTGTTG
CGGGTCACGAGGATCCCATCAAGATTGTCAGGGGCACACGGCTCTTCGAC
TACGACGCCTACAAGCCCAACTTCGAGGGCAAGTTCCGGTGTCTGGACGG
CTCCAAAGAGATCCCGTTCGACCACCTGAACGACAACTACTGCGACTGTG
AGGAGGACGGCAGCGACGAGCCCAGCACGAATGCCTGCGCCAAGGGGCGA
TTCTACTGTCGCTACCAGAAGCGTCACATCACGGGCCGGGGCCTGGATAT
CTACGTGGCCAGCAGCCGCATTAATGACCACGTGTGCGACTGCTGCGACG
GCAGCGATGAGTGGAGCACGGCGACCAAGTGTCCCAACGACTGTGCGGCA
AGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAA
TCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGT
CATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCG
AGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTAT
CAACAGGAGTCCAAGCGAGCTCGATATTCAATTTACGCCCCGCCCTGCCA
CCTCATCGCAGTACTGTTGTAATTTCATTAAGCATTCCTGCCGACATGGA
AAGCCATCCCAAACGGCATGATGGAATCTGAATCGCAGCGCATCAGCCCT
TGTCGCCTTGCCGATATATTTGGCCATGGTGAAACGGGGGCTAAAAGTTG
GTCATATTGGCCCGTTTAATCAAATCTGGGTGAAACTCACCAGGATTGCT
GAACGAAAAAAACATATTCCATTAATCCT
UFO11344.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:37:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7685-RA | 940 | CG7685-RA | 104..742 | 9..647 | 3195 | 100 | Plus |
| CG7685-RB | 922 | CG7685-RB | 104..724 | 9..647 | 2915 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:37:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18405487..18405804 | 330..647 | 1590 | 100 | Plus |
| 3R | 32079331 | 3R | 18405218..18405426 | 124..332 | 1045 | 100 | Plus |
| 3R | 32079331 | 3R | 18405043..18405160 | 9..126 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:37:39 has no hits.
UFO11344.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-23 10:28:21 Download gff for
UFO11344.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7685-RA | 34..672 | 9..647 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:22:30 Download gff for
UFO11344.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7685-RA | 104..742 | 9..647 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:34:42 Download gff for
UFO11344.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7685-RA | 104..742 | 9..647 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:34:42 Download gff for
UFO11344.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18405043..18405159 | 9..125 | 100 | -> | Plus |
| 3R | 18405220..18405425 | 126..331 | 100 | -> | Plus |
| 3R | 18405489..18405804 | 332..647 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:22:30 Download gff for
UFO11344.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14230942..14231147 | 126..331 | 100 | -> | Plus |
| arm_3R | 14230765..14230881 | 9..125 | 100 | -> | Plus |
| arm_3R | 14231211..14231526 | 332..647 | 100 | == | Plus |
