UFO11345.5prime Sequence
1136 bp (1023 high quality bases) assembled on 2012-04-23
> UFO11345.5prime
CAGTCGACATGCCGTTGCAGGCCGCCAATGTCCAGGAGCAGCAGTCTTCT
CCGGTGGCTTTATATCCGACATCGGCCTCCCCGGTGGCTGTTCAATCGCC
ACAGGACGCATTTTTGGCTGTTCAGTCGCCAGGGGCTCCTGCCCCCGTTC
AACTGGCCAACTCGTCCGACCAGCAGAATAATCCGGATGCGGACGCCATT
GCCTCCAAACTGCCCATGCCAGTTATCATCAAGGAGGAGCCGATCTCTGT
CAACGATGAACCGTCCGTCGACAATATAGAGGACAATACCAGTGCCAGTA
CCAGTGCCAGCGGCATCGGGGGCAAGATCCCATTTAAAAAAATCTTCCAA
AAGCGCAAGAAGTCGTCTGAACGCACTCGGGACAAGAAGTTGCGACAGAA
CCGCCAGCTGCGCAAGTCCATGCTCCCCAAGAACGCTCTGATGGCCCTCA
ACGAGGTGAAGGGCGTGACCATCAGCGATTTCACCATCGACAGCAATACC
GACGGGGGATTCACGGCCGTTGTCACTGTCAACTCGAATCAGTACGAGGG
CAAGGGTACCTCGAAAATGACAGCCAAGAACGCGGCCTGCGAGAAGGCTT
GGCGCGATTTTATTATTGCAAAAATGACCCCCAAGCCGCCCCGTATTCAC
CAGGTGGAGATGGGTTCGGAGCCAATGGATATCAACGAGGATGAGGCCGA
TGCACCGGATGATGATCTGCCCATGTTGAATCTGGCCTCGTTTGCCATCT
ACAAGCTGTTCGCGGAGTGGGAACGGGAGGGCTATGTCGTGCCCGAGATG
CACCCTTCGGCCAATGCTGCCCAACAGGCGGGAGGAGATGCCGGAACTCC
AGTTCCCCCCGTGCCGAAGAGCCAAAAAGCCGCCAGTGCGCACCGAGCTA
CCCTCTGGCTGGGAGACCATGCACCGGCGACCATTCTTTGCATTATGCGT
CCGGACTCAACTACGTGGACTACGGTCATCTGGCGACAGACAACGGCATG
CAGCATCTGGATCATGGTGACAACAGAGTTCCACCGCCACCGCGATCAAG
AAAAATCGCCCGTCGCAACGGTGCCGTAAAGTTGGCAACCTCCTCTGTTC
CGAACAACTTAACCTAACGCGAACCCCATGCAAGCT
UFO11345.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:37:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DIP1-RI | 3477 | CG17686-RI | 1082..2202 | 9..1116 | 4990 | 97.3 | Plus |
| DIP1-RG | 3195 | CG17686-RG | 1154..2274 | 9..1116 | 4990 | 97.3 | Plus |
| DIP1-RE | 3823 | CG17686-RE | 1428..2548 | 9..1116 | 4990 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:37:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21626313..21626891 | 944..369 | 2730 | 99.3 | Minus |
| X | 23542271 | X | 21628361..21628721 | 369..9 | 1805 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:37:42 has no hits.
UFO11345.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-23 10:28:21 Download gff for
UFO11345.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DIP1-RE | 1431..2532 | 1..1089 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:22:33 Download gff for
UFO11345.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DIP1-RE | 1431..2532 | 1..1089 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:34:43 Download gff for
UFO11345.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DIP1-RE | 1421..2522 | 1..1089 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:34:43 Download gff for
UFO11345.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21626313..21626890 | 370..944 | 99 | <- | Minus |
| X | 21628361..21628727 | 1..369 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:22:33 Download gff for
UFO11345.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21497340..21497917 | 370..944 | 99 | <- | Minus |
| arm_X | 21499388..21499754 | 1..369 | 98 | | Minus |
