UFO11347.5prime Sequence
1149 bp (1045 high quality bases) assembled on 2012-04-23
> UFO11347.5prime
CAGTCGACATGTTTGACAACGCGATTAAACCTCATCCGGAGGCCAATGGA
GCTCCAATAAATGCAGGAGATCGGCCGATAACTACTGTCATTAATATTGA
ACCAGAACCAGAAACCGAAAGTCCAATTGGGATCTTCACATCACAACCGG
AAAGTCAACAACAACAACCCGAGCAGCTCCAATCCGAATCCGAGTCCGAC
AGAATGGCCAATTTTGACGATACGTTGCAACGCGCCCGCCTTGCCTTTTC
CAGTGGAAAGACCAGGAATGTCAGCTTTCGACGCAAGCAGCTGGAGAATT
TGCTGCGTTGCTATGAGGAGCACGAGAACGAGATCATCAGCGCCTTGGAG
GCGGATCTGCGACGTCCCAAGCAGGAGAGCCTCATCGTGGAAACGGAATT
CATGAAGAACGACATCAGGCACATCCTATTCCAGCTCGACGAGTGGGTGC
AGTCGGAGAAGCCGCCCAAGTCGTTTGTGAACATGATGGACGACGTCCAG
ATCTACAATGACCCCTTCGGAGTGGTTCTGGTGATCGGCGCCTGGAACTA
CCCGCTGCAGCTGCTGCTCGTGCCAGTGGCTTCCGCCATCGCCGCCGGAA
ACTGTGTGGTGATCAAGCCCAGCGAGATTGCCGCCAACTGCGCCAAGTTC
ATTGCCGATGTCATTCCAAAATATTTGGATAATGATTGCTATCCAGTTGT
CTGCGGTGGACCCAGCGAAACGGCGGAGCTGCTCAACCAGCGTTTCGACT
ACATCTTCTACACGGGCTCCACGCGCGTAGGCAAGATTATCCACGCCGCG
GCCAACAAGTACTTGACCCCCACCACCTTGGAGCTGGGTGGCAAAAGCCC
CTGCTACATTGACAAATCTGTGGACATGCGCACTGCGGTCAAGCGCATCC
TGTGGGCAAGCTGATTAACTGCGGACAGACCTGCATCGCTCCGGACTACA
TCCTCTGCTCCAAGGAGGTAACTACGATGCCAGCGAGCGTTTCATCGAAC
CCACCATTCTTGGTGAACGCAGCTTTCTAGAACATTCGGTTTGGCGCGCG
GGGCCCAGGTAGTTGTCATATCATATCATTAATCATATCATAATCCAACC
TAAGCTAAGGAGAATCCTGTATGACTATGTCTTGGAATTCTCACAATAA
UFO11347.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:37:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aldh-III-RO | 2448 | CG11140-RO | 340..1301 | 9..969 | 4785 | 99.9 | Plus |
| Aldh-III-RN | 2352 | CG11140-RN | 244..1205 | 9..969 | 4785 | 99.9 | Plus |
| Aldh-III-RQ | 2923 | CG11140-RQ | 982..1946 | 9..969 | 4745 | 99.6 | Plus |
| Aldh-III-RO | 2448 | CG11140-RO | 1450..1504 | 964..1019 | 240 | 96.4 | Plus |
| Aldh-III-RN | 2352 | CG11140-RN | 1354..1408 | 964..1019 | 240 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:37:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7470393..7470617 | 684..460 | 1125 | 100 | Minus |
| 2R | 25286936 | 2R | 7470702..7470883 | 461..280 | 910 | 100 | Minus |
| 2R | 25286936 | 2R | 7469909..7470072 | 847..684 | 820 | 100 | Minus |
| 2R | 25286936 | 2R | 7473722..7473844 | 221..99 | 615 | 100 | Minus |
| 2R | 25286936 | 2R | 7469723..7469847 | 969..846 | 575 | 99.2 | Minus |
| 2R | 25286936 | 2R | 7473288..7473346 | 280..222 | 295 | 100 | Minus |
| 2R | 25286936 | 2R | 7475440..7475494 | 63..9 | 275 | 100 | Minus |
| 2R | 25286936 | 2R | 7469474..7469517 | 1007..964 | 220 | 100 | Minus |
| 2R | 25286936 | 2R | 7475342..7475378 | 99..63 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:37:11 has no hits.
UFO11347.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-23 10:28:15 Download gff for
UFO11347.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aldh-III-RJ | 972..1992 | 1..1019 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:22:17 Download gff for
UFO11347.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aldh-III-RN | 234..1203 | 1..967 | 99 | -> | Plus |
| Aldh-III-RN | 1358..1408 | 968..1019 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:34:30 Download gff for
UFO11347.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aldh-III-RN | 234..1203 | 1..967 | 99 | -> | Plus |
| Aldh-III-RN | 1358..1408 | 968..1019 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:34:30 Download gff for
UFO11347.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7473722..7473843 | 100..221 | 100 | <- | Minus |
| 2R | 7475342..7475377 | 64..99 | 100 | <- | Minus |
| 2R | 7475440..7475504 | 1..63 | 93 | | Minus |
| 2R | 7470702..7470882 | 281..461 | 100 | <- | Minus |
| 2R | 7469474..7469513 | 968..1007 | 100 | <- | Minus |
| 2R | 7469725..7469845 | 848..967 | 99 | <- | Minus |
| 2R | 7469909..7470072 | 684..847 | 100 | <- | Minus |
| 2R | 7470394..7470615 | 462..683 | 100 | <- | Minus |
| 2R | 7473288..7473346 | 222..280 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:22:17 Download gff for
UFO11347.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3356979..3357018 | 968..1007 | 100 | <- | Minus |
| arm_2R | 3357230..3357350 | 848..967 | 99 | <- | Minus |
| arm_2R | 3357414..3357577 | 684..847 | 100 | <- | Minus |
| arm_2R | 3357899..3358120 | 462..683 | 100 | <- | Minus |
| arm_2R | 3358207..3358387 | 281..461 | 100 | <- | Minus |
| arm_2R | 3360793..3360851 | 222..280 | 100 | <- | Minus |
| arm_2R | 3361227..3361348 | 100..221 | 100 | <- | Minus |
| arm_2R | 3362847..3362882 | 64..99 | 100 | <- | Minus |
| arm_2R | 3362945..3363009 | 1..63 | 93 | | Minus |
