UFO11348.5prime Sequence
1130 bp (991 high quality bases) assembled on 2012-04-23
> UFO11348.5prime
CAGTCGACATGAACAAGGTCGAGTTCAAAAACAAGAACAAGGATCAGGGA
CCCTGCGCCCGCGTGCGTAAGATTCGTCCAATTAACATGGGCGGCAACGT
GGAGCAGCGTCCTTGGACTCCAACTGTTAGGATCGGCAAGATCGCCGCCG
AGACCACCAATCCGGGTCCAGCCACTGTCCAACTTCCAACCTTGATAGGC
AGCAAAGTTCCCGACTCCAAGAAGAAGGCCGCACCCTCGTACTCCTTTGG
CCACAAGTTGGGCGGAAAGTATGACACCTCCGGACCGGGTCCGGCGCAGT
ACAATGTTACGGGTATGCGAGCCAAGGGTCGGGATTATCCTCGAGCAGCC
ACTCTGCAGAGCAGACCCAAGGAACTAACACGCTTCTCGAATCCCGGACC
TGGGGAATACGATGTGGTGCCGGCGGCCAAGGCGGTGATCGATGCCACGC
CCAAATACACTTTTGGCCAACGGCCGGTCGCGTTGAAAACCTTCCAGATA
CCAGCTCCTAATGTCTACAAAATACCGACCGTCATGGGCAGCAGCAAGGA
GGGCAAGATTCGTTCGGCTCCGGCTTATACGATTACGGGTCGGGAGAAGC
CTCCGCTGATTCCGGTGATGATCTTCCCCGGACCCGGTTACTACGACGGC
GAGTACACGGTGGTCAAACCAAAGCCACCAGTCTTCTCCATGCGCGGCAA
GTACAAGATGGGCAGCGAGGACTCGAAGCCCGGACCCGGAGCGCACTGTC
CCGGAGAAGTACTGGGAGAAACGTTCGCCTCCTGCCATATCCTTTGGCAT
CCTGCACTCCCCCTATATCAAGAACCATTGCCAGTCAACGTTCCGCAGCG
TTGTGTTCGCTCTTTGTTGGAGAATCGGGCGGACAAGCCCTAACGATAAT
ATTTGCAGCTTTCTAGACATTCGTTGGCGCGCGGGCCCCAGGTAAGTGGT
CATAATCAATATTCATAATCATAATCCTAATCACAACTAGCCCTAGGAGA
TCTCTGGGTCATGACTAGTGCTGGAATTCTCACCCAATAAAAAACGCCCC
GGGCGGCATCGAACGTTCTGGACAAATCCGGATGGGAGTCTGGAAGGTCT
ATTACGGTAATCATATAACAGGAGTTCCAG
UFO11348.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:37:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8086-RB | 1053 | CG8086-RB | 116..1011 | 9..905 | 4415 | 99.7 | Plus |
| CG8086-RA | 1354 | CG8086-RA | 425..1312 | 17..905 | 4375 | 99.7 | Plus |
| CG8086-RK | 1508 | CG8086-RK | 425..1166 | 17..759 | 3690 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:37:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8252228..8252536 | 504..196 | 1545 | 100 | Minus |
| 2L | 23513712 | 2L | 8244977..8245226 | 751..502 | 1250 | 100 | Minus |
| 2L | 23513712 | 2L | 8252594..8252777 | 199..16 | 920 | 100 | Minus |
| 2L | 23513712 | 2L | 8244587..8244734 | 905..758 | 645 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:37:15 has no hits.
UFO11348.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-23 10:28:16 Download gff for
UFO11348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8086-RB | 109..1013 | 1..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:22:19 Download gff for
UFO11348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8086-RB | 109..1013 | 1..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:34:32 Download gff for
UFO11348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8086-RB | 109..1013 | 1..908 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:34:32 Download gff for
UFO11348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8244585..8244732 | 760..908 | 98 | <- | Minus |
| 2L | 8244970..8245223 | 505..759 | 99 | <- | Minus |
| 2L | 8252228..8252533 | 199..504 | 100 | <- | Minus |
| 2L | 8252595..8252777 | 16..198 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:22:19 Download gff for
UFO11348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8244585..8244732 | 760..908 | 98 | <- | Minus |
| arm_2L | 8244970..8245223 | 505..759 | 99 | <- | Minus |
| arm_2L | 8252228..8252533 | 199..504 | 100 | <- | Minus |
| arm_2L | 8252595..8252777 | 16..198 | 100 | | Minus |
