UFO11349.5prime Sequence
1150 bp (1027 high quality bases) assembled on 2012-04-23
> UFO11349.5prime
CAGTCGACATGAGAACTTCTTGTGTAATTTTTGTGGCCCTTCTGTGCTGC
TCCTTGGGCTCCGCCAAGCTCTTCGATGATGAGCTGCGCGAACTGACGGA
GTTCCTGCGTTTGCAGATGCGATGTGGCTACCCGGCCAGAGGGGTTCCCA
TTTTGGCCCCGGCTCAGATGGCCTACAAGGAAATTGGCATCAGAACTGAG
AACTTTGGTTGCAATGGAAACTTCACCGATCTGATTATCGAGGGATTGGA
TGGGTACGAGTTCTCCAAGCTGGAGTGGAACAACATTTTGCATACCATTA
AGTTCGACATGAACTTCCCCAAGATTTCCCTGAAGAGCACAAACTATAAA
CTAAATCTCCTGGCTCGTCTATTTGGTGCCGATTTCTCCCTGTGGGGTGA
CGGTGCCCTCAGTCTGGAGTTGATCAATTTCCGAGCTTACGGCAGTTTCG
TTATTCGCCCAAAGTCGGCCACCAGTGGTGTGTACGCCAAGAGCTGGAAG
GTTAACTGGGAATTGGAGGAGGCTAAGTCCCAGACCACGGGCTTTATGAA
CAGTCGTCTGTACACGAAGTTCATCAACGATCTGATCGTGGAGTATCTCG
ATATCATGATCAATGACAACCCCACGGAAGTTTCCCAATTCATGGAGGAG
CTCATTGTTCCGCCCATGAATTTGGTTCTGGATAATCTGGCCTGGTATGA
GATTACCGCTATCATTTTGGGCCTGGCCGAGGGAATTTTGCCGGTGGAGC
CAATTTGCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTA
AGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAG
GAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCATAAAAACGCCCGG
CGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTAC
TGGATCTATCAACAGGAGTCCAGCGAGCTCGATATCAATACGCCCCGCCC
TGCCCTCATCGCAGTACTGTTGTAATTCATTAAGCATCTGCGAAATGGAG
CCATCCAAACGGCATGAATGACCTGATTCGGCAGCGGCCATCAGCGACCT
GGTCGCTTGGGCTATAATATTTGGCCATTGGTGAAAACGGGGCGCAAGAA
UFO11349.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:37:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7968-RA | 867 | CG7968-RA | 19..768 | 9..758 | 3750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:37:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13849680..13850230 | 208..758 | 2755 | 100 | Plus |
| 2L | 23513712 | 2L | 13849418..13849617 | 9..208 | 1000 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:37:56 has no hits.
UFO11349.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-23 10:28:23 Download gff for
UFO11349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7968-RA | 2..765 | 4..769 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:22:38 Download gff for
UFO11349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7968-RA | 11..777 | 1..769 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:34:49 Download gff for
UFO11349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7968-RA | 11..777 | 1..769 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:34:49 Download gff for
UFO11349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13849410..13849617 | 1..208 | 98 | -> | Plus |
| 2L | 13849681..13850239 | 209..769 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:22:38 Download gff for
UFO11349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13849410..13849617 | 1..208 | 98 | -> | Plus |
| arm_2L | 13849681..13850239 | 209..769 | 99 | == | Plus |
