UFO11351.5prime Sequence
1118 bp (1024 high quality bases) assembled on 2012-04-23
> UFO11351.5prime
CAGTCGACATGGAAATGGCTATCTGCGGCGGTGGCATCCCCACCTTAATG
CTACTGATAATGACTGCGATCATAAGTTTGGTCCAAGCTGCAGATACCTG
GCAGCGTTTACCATCCCTAGAAACGTTTTCCTCATATGAGGACATGCAGC
GTTACTTTGATCAACGGAATTTCCGCAGCATGCGTCAAATTGACAATCCC
ACGGGTGACACCTACTTGGCAGCCTTCAATCAGTACAATGAGCAAGTGGA
GAATCAGTCTCCAAGACGTGTGGCCCAAACCCACTCTAGGATCAAGCGTG
AGCAACGCCAACTGCCAACGGCACCAAGAATGCTGCGTTTCGAGCTGGCG
GATGCCGTCGAGCCAAGTCCGGAACTTAAGCAAATTCTACGTCAATATCA
CGCCAGAGCCCTCAAGGAAAATCCCACTGCTGCAAGTCCAGCCAGTACCA
GTCAGGCACCGACTCCTGCAGTTAGTCCCACCAAGGCCACAAAAGCCAAG
TCCCGGAAACCACGTCGACAGAGACGATCAGTTGTGGGTGCCCAGCAGCC
GGCGGATTTTAAAGTTCAAATGATCCCTTTCGAAGAAACAGATGCTAGGG
AGCCCGATCCCATCACAGCTCAGCTGATCAAGAAGGCACGCTCCCTGGAT
CTCCAGAGTCAGGCCACTAGATCCACAGACTTTCGCCACACTAAGCCCCA
AGTGGCCAGGAAGCAGCCTATTCAGGTGAGGATTCGCAAAACAAAGCGCT
CCAAGCGTTCGGCTCCGCAGATGATCAAATTTGAGTTGGCCGATGCCAAA
GCCATGCCCCAAAGATCTGGCAAACAAATGGTATCTGAAGCTGTACCCAC
TCTACTGACTATGGAAACCCAGAGGAATAACACCCAAGCTCCGCAGCTGA
CTACAACCACTCCTCGGGTGGAGGACAATGATATCCTCACTGGTGAAGCT
ACGGCGGAAAACCAAACGCATGTTATGTTTACAAGAGCTCCTGTCATTCT
GGACATGTGAAGACAAGAATCCTGACCACTTTGCCCCATGAGTGCAAAAG
TCATAGCAGCTGATGAAAGATTGATTGGGTGCAAGCGTATGTCAGTATCC
TCTGACAGATTCGACTAG
UFO11351.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:38:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr50Ca-RA | 3427 | CG13338-RA | 269..1370 | 9..1099 | 5115 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:38:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13774338..13775288 | 139..1081 | 4170 | 97.8 | Plus |
| 2R | 25286936 | 2R | 13774187..13774278 | 50..141 | 460 | 100 | Plus |
| 2R | 25286936 | 2R | 13770975..13771016 | 9..50 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:38:05 has no hits.
UFO11351.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-23 10:28:25 Download gff for
UFO11351.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr50Ca-RA | 263..1373 | 2..1102 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:22:44 Download gff for
UFO11351.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr50Ca-RA | 263..1373 | 2..1102 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:34:53 Download gff for
UFO11351.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr50Ca-RA | 263..1373 | 2..1102 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:34:53 Download gff for
UFO11351.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13770969..13771016 | 2..50 | 91 | -> | Plus |
| 2R | 13774188..13774277 | 51..140 | 100 | -> | Plus |
| 2R | 13774340..13775312 | 141..1102 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:22:44 Download gff for
UFO11351.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9658474..9658521 | 2..50 | 91 | -> | Plus |
| arm_2R | 9661693..9661782 | 51..140 | 100 | -> | Plus |
| arm_2R | 9661845..9662817 | 141..1102 | 98 | | Plus |
