UFO11352.5prime Sequence
1018 bp (978 high quality bases) assembled on 2012-04-23
> UFO11352.5prime
CAGTCGACATGGCCAACTCCAAGCGAAAGCTGCCCACGAAACCCAGTGCC
ACAGAGGACGCTACTCCGCACAAAGATACACCTAGGTCGTCGGAAGAATT
CCCCACAGATGTAAATCACAAGAGTGCCAAGAAGTCCTTCCTTCCTCAAA
ACGCATTCTTTCGAGATTGCCTCGGTCACGATCTGAGCAACTTCACTAGC
CTGACCAACTTTACCAGCTGGCTAAACAGACCCGTAGATGGAGCTGCCCT
GGGCATCTTCCGTCTGCTCTACGGAGCAGCCATGCTGATTGACATCGCAG
AGGAGCGAGGTGGCGGCCAGCTGGACGTGCGGTTTCAGGAGCCGCTACAC
TGCCACTTTCCACTGTTCAACGGGATGCGAGCATTGGACTATCCACTGAT
GGGCTGCGTCTATCTGTGCATGTGGCTGGGCGCGTGGGGCATCATGCTGG
GCTATCGATTCAGGACTAGCTGCCTGGCCTTCCTGATACCCTACTGGTAC
ATCTTCCTGCTGGACAAACCGACGTGGAATAACCACAGCTATCTATTCGG
CCTGGTGGGAACATTGCTGCTCTTCACCCAAGCGGAGTCCTACTGCTCCC
TGGACAGATGGCTAAATCCCCGAAAGAGTCACTGTATTCCCTACTGGAAC
TACTTCCTAATCAAATTCCAGTTCTTCATCCTGTACATGTACGCAGTCTG
AAGAAATTCTCGCTGGAATGGCTATCGGGATACGCGATGTCCAATCTGAG
TTACCACTGGGTCTTTGCCCCGTTCCGGCAAGTGATTGATCCGGAGCTGA
TAGACCTGCTCATCGTGCATTGGTTCACCGCCTTCTTCGACGTGTCATTT
GCTTTTTTCATGACTCTGGAAAAAACGCGCCTACTGTCACTCCTTTTCAT
GCTCAGTTTCATCTAATGAACTCCCGACTGTTTGAAAATGCATGTTTCCT
TGAGTGTGTCTGGCCGAAGTGCCGCTCTTCTTCAGCTTTCGATTGACGAA
GGAGCTAGGCAACTGGTT
UFO11352.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:38:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GC-RB | 2382 | CG13927-RB | 30..1041 | 9..1017 | 4730 | 98.2 | Plus |
| GC-RA | 2673 | CG13927-RA | 321..1332 | 9..1017 | 4730 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:38:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1625075..1625661 | 595..9 | 2935 | 100 | Minus |
| 3L | 28110227 | 3L | 1624676..1625017 | 934..595 | 1470 | 98 | Minus |
| 3L | 28110227 | 3L | 1624520..1624597 | 1017..940 | 225 | 85.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:38:10 has no hits.
UFO11352.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-23 10:28:26 Download gff for
UFO11352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GC-RB | 23..1041 | 1..1018 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:22:45 Download gff for
UFO11352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GC-RA | 314..1332 | 1..1018 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:34:54 Download gff for
UFO11352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GC-RA | 314..1332 | 1..1018 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:34:54 Download gff for
UFO11352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1624670..1625016 | 596..939 | 97 | <- | Minus |
| 3L | 1625075..1625668 | 1..595 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:22:45 Download gff for
UFO11352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1624670..1625016 | 596..939 | 97 | <- | Minus |
| arm_3L | 1625075..1625668 | 1..595 | 99 | | Minus |
