UFO11353.5prime Sequence
1150 bp (1014 high quality bases) assembled on 2012-04-23
> UFO11353.5prime
CAGTCGACATGCTTAAAGGTGTTCCCACGCTAGCCGGTCGAAACCTTCGT
CTCCTGACGACCCAGGCACAGGTGCTGGTCCATCAACGCGCCAAAGCGTC
CGCCGCCGAGCCCGTCGAGGACTTTGACCAGGAGACGGATCTTTTGAAGC
GCGCCAAGTTCGGACACACGGGCAAACAGCTGCAGCAGAAAATAATCAAT
GAGAAAAATCTGCGCGCTCCACCGCTTATGAACTTGGTGTTTGCCAATCG
GAAGTTGTCCTTCTACGATACCAGTTCCACTCCCAAGACCAAAGAGGATA
ATGCCAAGCTCCATCGCGAGCAGGAGCAGCGAAATGCGGAGGATGTGCTA
TTCGACATGTTCGCCAGCGAGGAGACGGGCCTCATCTCGATGGGCAAGTT
CCTGGCCGGGCTAAAGACCACCGGAATTCGCCGGAACGATCCGCGAGTGC
GAGAACTGATGGACAACTTGAAGAAAGTGCACAAGCTAAATAACTACGAG
ACGGGTTCTTCGGCGGAAACTCAGCATCTCAATCGAGAGACCTTCAAGGC
TGTGGTTGCCCCCAATATTGTGCTGATTGCCAAGGCCTTCCGGCAGCAGT
TCGTTATTCCCGACTTTACGAGTTTCGTCAAGGACATCGAGGATATTTAC
AATCGCTGCAAGACCAACACTTTGGGCAAGTTGGCCGACTACATTCCGCA
GCTGGCTCGCTATAATCCCGATTCCTGGGGCCTGAGCATCTGCACGATTG
ATGGCCAGCGCTTCTCCATCGGCGATGTGGATGTGCCCTTCACACTCCAG
AGTTGCAGTAAGCCGCTGACCTACGCCATTGCCCTGGAGAAACTGGGTCC
CAAGGGTCGTGCACTCTTATGGGGGGCCAGGAGCCGAGTGGCAAGGAACT
TCAACGAACTTGTTCTGGATCAGAACAAAAAAGCCACCACATCCGATGAT
CACGCTGGGTGCCATTCTGACGTGCTCCCTGATGACCGCCCTTGTCAGGC
CGGACATGACCTCCGCTGAGATCTCGACTACCCCATGTTCTTGGGTCAAC
GGGCTGTCGGGCGGAGAGTATATTCGGCTTATATGGCGTATCCTGTCGAA
CGCGAGGGCTGCCGGATCGGACTATGCCCTGGGCTTCACATGCGGGGAGA
UFO11353.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:38:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42708-RH | 2620 | CG42708-RH | 192..1329 | 9..1146 | 5130 | 97.6 | Plus |
| CG42708-RA | 3005 | CG42708-RA | 192..1329 | 9..1146 | 5130 | 97.6 | Plus |
| CG42708-RJ | 2303 | CG42708-RJ | 70..1012 | 204..1146 | 4155 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:38:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12672664..12673037 | 927..551 | 1720 | 98.9 | Minus |
| 2R | 25286936 | 2R | 12673100..12673339 | 550..311 | 1200 | 100 | Minus |
| 2R | 25286936 | 2R | 12679208..12679402 | 203..9 | 975 | 100 | Minus |
| 2R | 25286936 | 2R | 12676125..12676233 | 310..202 | 545 | 100 | Minus |
| 2R | 25286936 | 2R | 12672443..12672592 | 1073..924 | 430 | 88.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:38:14 has no hits.
UFO11353.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-23 10:28:26 Download gff for
UFO11353.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42708-RH | 182..1327 | 3..1149 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:22:48 Download gff for
UFO11353.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42708-RA | 186..1331 | 3..1149 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:34:55 Download gff for
UFO11353.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42708-RA | 186..1331 | 3..1149 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:34:55 Download gff for
UFO11353.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12673100..12673339 | 311..550 | 100 | <- | Minus |
| 2R | 12676125..12676231 | 204..310 | 100 | <- | Minus |
| 2R | 12679208..12679408 | 3..203 | 98 | | Minus |
| 2R | 12672664..12673037 | 551..927 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:22:48 Download gff for
UFO11353.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8560169..8560542 | 551..927 | 98 | <- | Minus |
| arm_2R | 8560605..8560844 | 311..550 | 100 | <- | Minus |
| arm_2R | 8563630..8563736 | 204..310 | 100 | <- | Minus |
| arm_2R | 8566713..8566913 | 3..203 | 98 | | Minus |
