UFO11354.5prime Sequence
1116 bp (998 high quality bases) assembled on 2012-04-23
> UFO11354.5prime
CAGTCGACATGTCGAAAATGAGGGGTCGCATTCTGATCCCACTGCCCAAT
ACCGGAGCGATGGGTCGCAAGCGCAACAACTTCTACATGCGGAGTCTGTT
CCTGCTGGCCCTGGGCATTTTCGGTCTGCTCCAGTACAACAACTTCAATT
ATCTGGACTCGCGGGACAATGTGCTGGGCGACGCGGTGACCAACGACTCG
GACGACGCCATCCTGGCCATGGTGCCCGCCACCCTGCACAAGTATCTGAC
GCCCCACTCGCGCAATCACAGCGCCTCGGGAGCAGGAGCCCTCAACGGCG
CGGCCCTGCTCCTGAATGCCAGTAGTCCGGGCGCAGCTACTGCCAGCACC
ATCAGCTTCGACGTGTACCATCCTCCGAATATCACCGAGATCAAGCGCCA
GATCGTCAGGTACAACGACATGCAGATGGTGCTCAACGAGGACGTCTTTG
GACCGCTGCAGAACGACTCTGTGATAATCGTGGTCCAGGTGCACACGAGG
ATCACCTACCTGCGCCACCTGATCGTCAGCCTGGCGCAGGCCCGGGACAT
TTCGAAGGTGCTGCTGGTGTTCTCGCACGACTACTACGACGACGACATCA
ACGACCTGGTGCAGCAGATCGACTTCTGCAAGGTGATGCAGATCTTCTAC
CCGTACTCCATTCAGACGCATCCTAACGAGTATCCCGGCGTGGATCCCAA
CGACTGTCCGCGAAACATCAAAAAGGAGCAAGCTCTGATCACCAACTGCA
ACAATGCGATGTATCCCGATCTCTATGGCCACTATCGGGAGGCGAAGTTC
ACGCAGACGAAGCACCATTGGATCTGGAAGCCAACCGGGTGTTCAACGAA
CTGGAGTGACCCGCTATCACACAGGACTGGTGCTGTTCCTCGAGGAGGAC
CACTACGTGCCGAGACTTCCTGTACCTGCTGCTTTGATGCAGCAACGCAC
AAAGACTTGTGCCCCAGTGCACGTGCTGTCCCTGGCACCTATCTCAGACT
TCACTACTACACGTTACACAGCAGACTACAAGAATCTATGCTTCCTCGCT
GATCTCGACAAAGTCTATTAGATCCAAAGATTACATGAAACTCTTGTGCC
ATTACTGGTTCGCCCT
UFO11354.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:38:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mgat2-RA | 3331 | CG7921-RA | 642..1726 | 5..1071 | 4925 | 98 | Plus |
Mgat2-RC | 3034 | CG7921-RC | 642..1672 | 5..1023 | 4795 | 98.4 | Plus |
Mgat2-RB | 2672 | CG7921-RB | 343..1373 | 5..1023 | 4795 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:38:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30018691..30019118 | 730..303 | 2140 | 100 | Minus |
3R | 32079331 | 3R | 30019182..30019331 | 303..154 | 750 | 100 | Minus |
3R | 32079331 | 3R | 30019389..30019518 | 153..24 | 650 | 100 | Minus |
3R | 32079331 | 3R | 30018487..30018633 | 875..731 | 635 | 98.6 | Minus |
3R | 32079331 | 3R | 30018298..30018431 | 996..870 | 305 | 94 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:38:19 has no hits.
UFO11354.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-23 10:28:27 Download gff for
UFO11354.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mgat2-RB | 377..1401 | 1..1014 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:22:49 Download gff for
UFO11354.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mgat2-RA | 639..1726 | 1..1071 | 97 | -> | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:34:57 Download gff for
UFO11354.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mgat2-RA | 639..1726 | 1..1071 | 97 | -> | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:34:57 Download gff for
UFO11354.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30017933..30017988 | 1021..1071 | 91 | <- | Minus |
3R | 30018271..30018426 | 875..1020 | 91 | <- | Minus |
3R | 30018488..30018633 | 731..874 | 98 | <- | Minus |
3R | 30018691..30019117 | 304..730 | 100 | <- | Minus |
3R | 30019182..30019331 | 154..303 | 100 | <- | Minus |
3R | 30019389..30019517 | 25..153 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:22:49 Download gff for
UFO11354.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25844210..25844355 | 731..874 | 98 | <- | Minus |
arm_3R | 25843993..25844148 | 875..1020 | 91 | <- | Minus |
arm_3R | 25843655..25843710 | 1021..1071 | 91 | <- | Minus |
arm_3R | 25844413..25844839 | 304..730 | 100 | <- | Minus |
arm_3R | 25844904..25845053 | 154..303 | 100 | <- | Minus |
arm_3R | 25845111..25845239 | 25..153 | 100 | <- | Minus |