UFO11355.5prime Sequence
1127 bp (1022 high quality bases) assembled on 2012-04-23
> UFO11355.5prime
CAGTCGACATGACTGTTTGGGGAATAGAAGCCATCACACTGAACGGATCG
TCGGCAAGGGAAAGTTTGGAGCACCTTCCGGGAAACGGTGCAATTCGGGT
GATACCAGAGGCGGGAGCCATGAACTCCGTGGAGCGCTACCGTCAGGAGT
GGCAGGTGCTGCTTGAAAACCTCGATGCGGACCCGGAAAGTCTCCGGCAG
TCGGCATTTGCCGGCGATCTCAAGATGTCCAAATTCCGCAGCGTTCACTG
GGCCCTCCTACTGCGCGTCCTGACGTCGGAGCACCGCAGTTGGACTAGCC
AGCGACTTCAGCAGCGAGTTAGGTACGACAAGTTCCGGGCAGACTACGTC
CGCAATCCGCACCAACTGGCCGTGGACTGCAACGATGATCCGCTGTCGCA
GTCGACGCAAAGCGTGTGGAATCAGTACTTTAGCGACCAGGACCTATTCG
CCGTCATCCGGCAGGATGTGGTGCGCACTTTCCCGGGTGTGGACTTCTTC
CGTAAGCCATTGGTGCAGAATGCAATGGTCAACATACTGTTCTACTACGC
CAGGGAGCATCCGTATATGTGCTACCGGCAGGGCATGCACGAGATCCTGG
CTCCCATTATATTCGTTGTCTACAGCGATCACCAGTCCCTGCTTCACTTC
AGCGAACTGGCCAAAACGGATATTAATCCCACACTGCTGGACGTGCTGGA
TCCCGCCTATCTGGAAGCGGATACCTACTCTTTGTTCTCCCGCCTCATGG
CCCTCCGTGGAGTCGTACTATCGCGTCTCGAATCTGGTCTCCACACCCGG
TGGGCCACATCGAACAGCGAGCCGAGAGCCCCGGGGACAATGAGACGTCG
ACCGAGGCGGAGTTATCGGCCAGCTGAACTTCATACGGGACAAAATACTC
GCCAAGCAGGACCAGCACCTTGCACCACTATCTCCAAAAGATGGAAATCC
CACTGCACATATTCGGCATTCGAATGGCCTAGACTTCTCTTTGGGACCGG
AGTTTATGCTGCTGGACCTGTGCTACTCTGGGATGCCATCTTTCCCAGAT
AGCGACGCCTCGACCTGCCACCTACATCTAGTGCATTTGATGCAGTCCGG
AATAACCTGCTCTAGGACTACCCCAAT
UFO11355.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:38:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8449-RA | 2318 | CG8449-RA | 171..1244 | 9..1083 | 5035 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:38:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13271123..13271841 | 727..9 | 3595 | 100 | Minus |
| 3R | 32079331 | 3R | 13270767..13270911 | 969..825 | 630 | 98.6 | Minus |
| 3R | 32079331 | 3R | 13270969..13271065 | 826..728 | 395 | 98 | Minus |
| 3R | 32079331 | 3R | 13270536..13270631 | 1069..974 | 215 | 90.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:38:25 has no hits.
UFO11355.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-23 10:28:28 Download gff for
UFO11355.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8449-RA | 177..1259 | 1..1083 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:22:51 Download gff for
UFO11355.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8449-RA | 162..1244 | 1..1083 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:34:59 Download gff for
UFO11355.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8449-RA | 162..1244 | 1..1083 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:34:59 Download gff for
UFO11355.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13270969..13271065 | 728..826 | 97 | <- | Minus |
| 3R | 13270767..13270909 | 827..969 | 98 | <- | Minus |
| 3R | 13271123..13271845 | 1..727 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:22:51 Download gff for
UFO11355.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9096691..9096787 | 728..826 | 97 | <- | Minus |
| arm_3R | 9096489..9096631 | 827..969 | 98 | <- | Minus |
| arm_3R | 9096845..9097567 | 1..727 | 99 | | Minus |
