UFO11357.5prime Sequence
1161 bp (1032 high quality bases) assembled on 2012-04-23
> UFO11357.5prime
CAGTCGACATGACCAGGACGTGCAGAGTGTGTGGCTGCGACGACGGACGC
TACTGGATTGAAACGCCCGTGGAGAAGTACGCGGAGAAGACCTTCGTCCA
GCTGCTGGTCGAGCTAACGCGAATCGAGGTGGTCATGGCGCAAGCTGAGA
AGTTCCCACAGTGGCTGTGCTACGCGTGTGCCGAGAAGCTGGAGAGCACC
TACGATTTTGTGCTGCAGGCACGTCGAACACACGAGCTGTGGCTGCAGAA
AATCGGGGATTCTTTGAATGGGGATGACGAGATGGAGGGCACTGCGGCCT
TGGAATGCCTGCGTGAGACACCCATCCACCTGTTTGAGATTGAAGGCGTG
ACCATCAAGACGGAGGAACTGGCTTCAACGCAACAGGCGCCCAAGGCAGA
TCCTTTAGTGCGCCCGCGCATTGTCAAACGGAGTATTGTACACTTTAGCG
ATTCCGATGAAGACCTGGATGATGTGCCTCTGCGTCAACGTAAGATAGCA
GCCTCGGTCTGCGGCTCTGACACGACGAAGGAAAATGTTTGCGAGCTGTG
CAACAAGGTCTTCAGATATGTCACCAATCTGTATCGTCACAAGCAGAGGG
ACCACGGAATTCTGGGCAAGAACGGAGAGGATTATGAAGAAGACTATTAC
AAGTGCGATCTGTGCGATAAAACCTACAAGTACGTGATGGCGCTGGTGAA
GCACAAACACAAAGAGCACGGATCCAGTCTCCTGTCGAATAATTCCGGGC
GAAAGATGCCGTCAACTTTGGCCGAAGATGCCAATCCATACAGTCCAGCA
TCCATCTCTGAAAACATCCACTAATCAAAGCAGAACCCAACAACGACTCC
CTGGTACACAGCATCATCAGGCAGTGGTACTCTCCGATGAGGATGGCCAC
AGTGTGAAGATAGCTACTACAATTGCGATCAGTGTAGTAAATCGTACAAG
TACATTGTCAGCTTGATCAAGCACAAGCACAAAAAGCACCTAGAACAAGG
AGTCATACCAGGCAGTCGATGACGAAGAACGATCGCCTCTGGCCTCCACA
ATCCGCCTCGGCAGGTGCACCAACTGCAACTTCTAGATCACCGAAAGAGT
CGAACGGTTCGACTTTCCATCGAGCAGTCCTAACGGATCAAGAAATCAAG
GTGCATGGTAT
UFO11357.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:38:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10669-RB | 3310 | CG10669-RB | 97..1252 | 9..1161 | 5145 | 97.3 | Plus |
| CG10669-RA | 3008 | CG10669-RA | 97..1252 | 9..1161 | 5145 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:38:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25334441..25334952 | 638..127 | 2545 | 99.8 | Minus |
| 3R | 32079331 | 3R | 25334157..25334392 | 869..632 | 1090 | 99.2 | Minus |
| 3R | 32079331 | 3R | 25333776..25333973 | 1077..879 | 625 | 91 | Minus |
| 3R | 32079331 | 3R | 25335024..25335147 | 132..9 | 620 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:38:30 has no hits.
UFO11357.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-23 10:28:29 Download gff for
UFO11357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10669-RB | 132..1268 | 1..1137 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:22:54 Download gff for
UFO11357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10669-RA | 91..1227 | 1..1137 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:35:01 Download gff for
UFO11357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10669-RA | 91..1227 | 1..1137 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:35:01 Download gff for
UFO11357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25333712..25333973 | 879..1137 | 91 | <- | Minus |
| 3R | 25334147..25334392 | 632..878 | 98 | <- | Minus |
| 3R | 25334448..25334950 | 129..631 | 100 | <- | Minus |
| 3R | 25335028..25335152 | 1..128 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:22:54 Download gff for
UFO11357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21159434..21159695 | 879..1137 | 91 | <- | Minus |
| arm_3R | 21159869..21160114 | 632..878 | 98 | <- | Minus |
| arm_3R | 21160170..21160672 | 129..631 | 100 | <- | Minus |
| arm_3R | 21160750..21160874 | 1..128 | 96 | | Minus |
