UFO11359.5prime Sequence
1130 bp (1002 high quality bases) assembled on 2012-04-23
> UFO11359.5prime
CAGTCGACATGAGCAACAAGAGCACTCCGGTGCGGCAGCGCATCCAGCAG
TTCCAGACGCGAGGAGTCCACAAATCCACGCCGGCATCCGAGATGCGCAA
GAAGGTGCTGATGACGCGGGCGGAGGATCGGGAGCACCGGGATCGTCCCG
AACAGCTGCTGAACACTGCATTCAGCGGGAGCACGCCACAGCCGAAGCCC
AAGCCCACGGCCCTGAATGCCTGCTACACACCCTCGTCGCTGTACAGGAA
TGCGAACTCTACTCCTGGAAGAGCAAAGACGCCCGGCACCGGGAAATCCA
GCTGCAGCAGGACAAAGGAGCGGGACTCTCTGATGGAGTCCTGCCTCAGC
GTGTCCGAGGAGAGCAACATGATTGTGGCGGTGCGAGTGCGGCCACTGAA
TGCCCTGGAATGCACACGTGGTCAGGTCACCAATGTGGTCCAGGTGCACG
GAAACAGCAACGAGCTGACTGTCCAAGCGGGCAGCAGTGCTGATGCCTCC
GCCGGCGTGACGCACTTCTTCAGCTACGACCAGGTCTACTACTCGTGCGA
TCCCGAACGAAAGAACTTCGCCTGCCAGGCCAAAGTCTTTGAGGGCACAG
CGCGTCCCTTGATCGACACTGCCTTCGAGGGCTACAATGCCTGCTTGTTT
GCCTACGGCCAGACGGGCTCGGGCAAATCGTACAGCATGATGGGCATTGA
AGCATTGGATGACGCCGCTCTGGATGGCGGACCGCCGCACGATGAGGCGG
GCATCATTCCACGCTTCTGCCACGAGCTATTCCGCCGCATAGAGGCTGTG
AAAAGTCAGCAGCAGCTGCAGGTGGAGGTGGAGGTCAGCTACTTTGAGAT
CTACAACGAGAAGATACACGATCTGCTGAGTGTCCAGCATGCGGCAGCTG
CCACCGGGGAATCCACGCTCATCAGCAGCAACAACAGCAGCAGCGTCCGG
CTCTAAAGTCAGCAGCATCCCATCTTCGGGCCTACGTAGTGACTTGGAGT
GCCCACCTCGGTGGACTCGTACTCGATCGCACTGCTTGCCGTGGGCAACC
TCCAGCGGCACTGCCTCAAGCATGAACGACAGAGCTCGGCCTCAACTCCA
TTCTCAATTGTTCTACTCACCGAATCTGAA
UFO11359.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:37:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| neb-RA | 3592 | CG10718-RA | 98..1209 | 6..1101 | 4995 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:37:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20075854..20076876 | 6..1025 | 4780 | 98.9 | Plus |
Blast to na_te.dros performed 2014-11-28 02:37:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6842 | 885..969 | 144 | 69 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6676..6881 | 763..969 | 140 | 55.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6699..6767 | 900..969 | 140 | 68.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6809 | 892..969 | 132 | 66.7 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 682..732 | 967..916 | 131 | 75 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6740..6788 | 920..969 | 130 | 76 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1515..1612 | 882..974 | 126 | 63.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2331..2379 | 920..969 | 121 | 74 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2805..2856 | 920..969 | 120 | 73.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2358..2442 | 885..966 | 119 | 66.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6806 | 856..944 | 115 | 61.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2634..2661 | 920..947 | 113 | 89.3 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 152..195 | 920..967 | 113 | 77.1 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9182..9225 | 920..967 | 113 | 77.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1067..1115 | 920..969 | 112 | 72 | Plus |
UFO11359.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-23 10:28:23 Download gff for
UFO11359.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| neb-RA | 95..1170 | 1..1067 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:22:37 Download gff for
UFO11359.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| neb-RA | 95..1170 | 1..1067 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:34:47 Download gff for
UFO11359.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| neb-RA | 95..1170 | 1..1067 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:34:47 Download gff for
UFO11359.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20075851..20076926 | 1..1067 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:22:37 Download gff for
UFO11359.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20075851..20076926 | 1..1067 | 97 | | Plus |
