UFO11361.5prime Sequence
1154 bp (996 high quality bases) assembled on 2012-04-23
> UFO11361.5prime
CAGTCGACATGTCCGTGGACAACAGCTTGGGAATTCTAGACTTATCTTCG
GGTAAGGAGAGTGAGAAAACAGCAATGACAGCAGCAAACAAGGAGAACGA
TCCGGATTCCCATTTCACGGGTACTATCGTCACAACAGGCGCCACTGCTC
AGCCAGCCACGCCCACTACCTCAAATGCCACCGCCCTACCAGCCACGCCT
ACTGTGGCAGCTGGCCAGGATTTGGGTGACGGTGCATGTAGTAGTAAAAA
TACGGATTCCAAGTTTCAATCGTACGTAAATGGCAATGGCAATGGTGTGT
ACAAGATCATCAAGACACTCGGTAAGGGAAACTTTGCCAAGGTCAAGTTG
GCGATTCATGTGCCCACCGGTCGTGAAGTGGCCATCAAGGTGATCGATAA
GACGCAGCTCAATACGAGTGCACGTCAGAAGCTGTACCGCGAGGTGAAGA
TCATGAAACTGCTGAACCACCCGAACATCGTGCGCCTCTTCCAAGTCATC
GAGTCTGAGAGGACACTCTACCTGGTGATGGAGTACGCGAGTCGTGGCGA
GCTATTCGACCACCTGGTGAAGAACGGGAGGATGCGGGAGCGGGATGCCA
GGGTGATCTTCCGACAGTTGGTGTCCGCCATTCAGTACTGCCACAGCAAG
TTTGTGGTTCATCGGGATCTGAAGGCGGAGAACCTGTTGCTGGACCAGCA
CATGAACATTAAAATAGCGGACTTTGGCTTCGGCAATACCTTCGATCCCA
ACGCCCAGCTTGAAACGTTCTGCGGGAGTCCACCATATGCTGCCCCTGAA
CTTTTCATGGGCAGGAAGTACGCCGGCCCGGAGGTGGACGCCTGGTCGCT
GGGAGTGGTGCTGTACACTCTCGTCAGCGGGTCGCTGCCCTTTGATGGAA
GCACCCTAAAGGAGTTGCGGGAAAGAGTCCTGGCGGGGCAAGTACCGTGT
GCCCTACTACTCTCATGGGACTGCGAAAACCCTAATGAGAAGGTTCCTGG
TCCTGAATTCCCGCCAGCCCCACTTCGCTTTCTGCTGTGATGTCGGATTA
ATGAATAAATCTGGGCCACGATGAATCCGAACCGATTGCGTTCGTTTCGC
GGAGAGCCATGGAGCTGTCAGAATGCACCCGGTTCGATTACCTGATGAGC
ATGG
UFO11361.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:38:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| KP78a-RB | 4988 | CG6715-RB | 637..1780 | 9..1154 | 5275 | 97.8 | Plus |
| KP78b-RB | 4988 | CG17216-RB | 637..1780 | 9..1154 | 5275 | 97.8 | Plus |
| KP78a-RB | 4988 | CG6715-RB | 3091..3789 | 261..960 | 1390 | 80.5 | Plus |
| KP78b-RB | 4988 | CG17216-RB | 3091..3789 | 261..960 | 1390 | 80.5 | Plus |
| KP78b-RA | 2066 | CG17216-RA | 233..931 | 261..960 | 1390 | 80.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:38:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11349502..11350645 | 1154..9 | 5075 | 97.7 | Minus |
| 3R | 32079331 | 3R | 11347538..11348191 | 914..261 | 1380 | 80.7 | Minus |
| 2R | 25286936 | 2R | 19471301..19471467 | 757..923 | 220 | 75.4 | Plus |
| X | 23542271 | X | 2059589..2059660 | 731..660 | 195 | 84.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:38:50 has no hits.
UFO11361.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-23 10:28:32 Download gff for
UFO11361.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| KP78b-RB | 637..1780 | 9..1154 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:23:03 Download gff for
UFO11361.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| KP78b-RB | 637..1780 | 9..1154 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:35:09 Download gff for
UFO11361.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| KP78b-RB | 637..1780 | 9..1154 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:35:09 Download gff for
UFO11361.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11349502..11350645 | 9..1154 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:23:03 Download gff for
UFO11361.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7175224..7176367 | 9..1154 | 97 | | Minus |
