UFO11362.5prime Sequence
1119 bp (1014 high quality bases) assembled on 2012-04-23
> UFO11362.5prime
CAGTCGACATGAGTTTATTAGAGCCTCCTTGTCTAGTCCTGGAAAAGGCG
CTGCTTTTGGGAGCGTTGCTGCTGGCCGTCCTTGCCACACCACTTCTGGC
CACAAGCGGCTTACGGGTGCCCACATTCCTGCTGGAGCCCGCACCCCGGC
TGCTCTTCGGCAACGACACGGGTGCCCAGGTCACCTGCACCGCCCACGGC
AGCCCGCCGCCCCTCGTCACGTGGGTCCTTCGCGACGGATCGCTGGCCAC
CCAGGTGCCGGGCCTCAGGAAAATATCAGGCAACGGCACCCTGCACTTCC
CCCCATTCCTGGCCCAATATTATCGCACGGATGTTCACGAGGCCACCTAC
AGATGCCGGGCGAGCAACGAGGCGGGCACCGTCCTCAGTCGAAATGTTCA
GGTGCATGCAGTGGTGCGTCGTCAATTCCACGTGCACGTGGAAAACACTG
AAGTCTATTTGGGAAATTCGGCGTTGATTAAGTGCGCCATTCCGGAGTAT
GTGCGGCCCTATGTGCGCGTGGCCAGTTGGCATCGTGGCGAGGAGATACT
CCTGCCGGATCTGTCGGATGTCGCGGGACGCTATGTGGTCCTGGCCGCCT
CCGGGGATCTCTATGTGCGTTCCGTGCGTTCCGAGGACGGACTGATGAAG
TTCAGCTGCCTGGTGACAAATACACTGAACGGCGAGCGACAGCGCAGCGA
TGCGGTGATGCTGCAGTCAAAGAGTTAAGCAAGAATCTGGCTCCTCGGAC
CACCCAGAAACCGGTGATGGAGATTCACGTGGAGCGTGGAAACGACGTTT
CATCTGCCGTGCAACATCCAGGGCAACCCATTTCCCATATTTACCTGGTA
TCGCGTTTCCGACTCGGCAGCCCTTCTATCCCATACCCTCGTCACAGCGA
GTGATACTTTCGCGCACACTGCTGCTCATCAAAAATTGCTGACGACGCGA
TGCGGGCAAGTGGATTTGCAAGGCCTCGAATCAGTTTGGGGAGCAGCGCA
TCGAAGAATCCGACTCAGTGTCATTCGTATGTGTCCGGTGCATAATATTT
GCCGCAGTTCAAATTTGTCCATTTCGGCCGAACGGCCGAATTTCAATTTG
AACCGACCACGGGTTTAAC
UFO11362.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:38:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dscam3-RD | 3712 | CG31190-RD | 459..1561 | 5..1115 | 5055 | 97.8 | Plus |
| Dscam3-RC | 8231 | CG31190-RC | 864..1966 | 5..1115 | 5055 | 97.8 | Plus |
| Dscam3-RF | 7745 | CG31190-RF | 459..1561 | 5..1115 | 5055 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:38:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17497354..17497575 | 269..48 | 1110 | 100 | Minus |
| 3R | 32079331 | 3R | 17492436..17492600 | 573..409 | 825 | 100 | Minus |
| 3R | 32079331 | 3R | 17494087..17494232 | 411..266 | 730 | 100 | Minus |
| 3R | 32079331 | 3R | 17492037..17492180 | 716..573 | 720 | 100 | Minus |
| 3R | 32079331 | 3R | 17491727..17491849 | 844..721 | 570 | 99.2 | Minus |
| 3R | 32079331 | 3R | 17490286..17490403 | 963..845 | 450 | 97.5 | Minus |
| 3R | 32079331 | 3R | 17489855..17489928 | 1037..963 | 235 | 93.4 | Minus |
| 3R | 32079331 | 3R | 17498266..17498309 | 48..5 | 205 | 97.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:38:55 has no hits.
UFO11362.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-23 10:28:33 Download gff for
UFO11362.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dscam3-RC | 861..1966 | 1..1115 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:23:05 Download gff for
UFO11362.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dscam3-RF | 456..1561 | 1..1115 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:35:12 Download gff for
UFO11362.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dscam3-RF | 456..1561 | 1..1115 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:35:12 Download gff for
UFO11362.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17490286..17490403 | 845..963 | 97 | <- | Minus |
| 3R | 17491727..17491847 | 723..844 | 99 | <- | Minus |
| 3R | 17492030..17492179 | 574..722 | 99 | <- | Minus |
| 3R | 17492436..17492597 | 412..573 | 100 | <- | Minus |
| 3R | 17494087..17494229 | 269..411 | 100 | <- | Minus |
| 3R | 17497355..17497574 | 49..268 | 100 | <- | Minus |
| 3R | 17498266..17498312 | 1..48 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:23:05 Download gff for
UFO11362.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13316008..13316125 | 845..963 | 97 | <- | Minus |
| arm_3R | 13317449..13317569 | 723..844 | 99 | <- | Minus |
| arm_3R | 13317752..13317901 | 574..722 | 99 | <- | Minus |
| arm_3R | 13318158..13318319 | 412..573 | 100 | <- | Minus |
| arm_3R | 13319809..13319951 | 269..411 | 100 | <- | Minus |
| arm_3R | 13323077..13323296 | 49..268 | 100 | <- | Minus |
| arm_3R | 13323988..13324034 | 1..48 | 93 | | Minus |
