UFO11363.5prime Sequence
1143 bp (1021 high quality bases) assembled on 2012-04-23
> UFO11363.5prime
CAGTCGACATGGACCAGAATGGCGCATCGGGAAGTCATCCGAACAGGCTA
TCCCAAGGAAGAGGAGCCCATGCGCGCGAACGTGGCGCCACAGTTTCCGC
GGCGGCAAATCGGAGTAACATTATCGACGAAATGGCCAAAATATGCGAAG
CCGATCGCCAGACTTTCGCCATCGCTCGACGGACTCGGGGTCACGAGCGG
CTTGCGGTGGACAACAGCGACTTCGTCGCCGTGGAGGATCTTATTTTGTC
CTACGCAGAGCCCACGCCCGAGGACCAGGTCGAGATGATCATGAGCGACT
TTTGCTCGTCTCCAACATACGCAGAGGATGAGGATGAGCCCAGCCATGAG
TCGGAGCCGTGGTTTCGATTTCGCAACAAAAGGATCAGAACCTACAGCCG
GAAGAGGGATCCCAAAAGCCACAAGGCCGTTCAAAACGAGAAGCGTAGAG
GTTCCTCAGGCCTCTCCGTGCAGAGGGATCTCAATACTTCGTTCACATCT
ATGGCTTGTGATTTCGATGCTTCATCACAGAAGATACACGAGGTCCTTTT
GAACCTCAGTCAATACTTTTCCGCGACCGCGACAGCTTCCGGTCCGACTC
CTGTCCCATCGCAAATAGATCTGCCAACCGAAGCAAGGCAGGATTCTGGT
GACGAGTGTTTCAACGCTGAATTGGAGAACTTGAGGGATGACCTGTTGCA
GAGCGGATTTACATTTGAGGCCTCTTTCTATGAAAATGAGCATGAGCAGG
AAAGTCCAGGAACTATGGCAGACACTATTTATGGCGATAGCATGCAATCG
GTTCCCACTACGCGCCTCCGATTGGAAAGTGGAAAACGTAATGTTTGGTC
TGATGCAGACTCTACATTGAAAAAGCTGATGTCGAAATTGCTGAAAATAA
GAAACTTTTGATGGGCCAAACGCAAGCAAAAATGTGACATAGAGGAAGAA
CACAAACTTCATATAGGAGCATACCACCTAGTGATGGCTACTCCGATGGA
CTGCCCGAGATCTCAAGATGTATCAACATATACCCGATAAAAGTAAGTTG
AGCAGTTCCAGAAGAACAAAAGTAGCCAGATCATGCATCAAGGTAAGACT
CACAGTCTTGGTGATTACGAAACGAGGACCTACTATTTCGTGG
UFO11363.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:39:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Brca2-RA | 3291 | CG30169-RA | 130..1211 | 9..1071 | 4860 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:38:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24526301..24527044 | 9..752 | 3720 | 100 | Plus |
| 2R | 25286936 | 2R | 24527236..24527377 | 825..964 | 520 | 95.8 | Plus |
| 2R | 25286936 | 2R | 24527106..24527177 | 754..825 | 360 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:38:59 has no hits.
UFO11363.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-23 10:28:33 Download gff for
UFO11363.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Brca2-RA | 98..1161 | 1..1053 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:23:07 Download gff for
UFO11363.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Brca2-RA | 126..1189 | 1..1053 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:35:14 Download gff for
UFO11363.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Brca2-RA | 126..1189 | 1..1053 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:35:14 Download gff for
UFO11363.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24526297..24527045 | 1..753 | 99 | -> | Plus |
| 2R | 24527106..24527177 | 754..825 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:23:07 Download gff for
UFO11363.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20413820..20414568 | 1..753 | 99 | -> | Plus |
| arm_2R | 20414629..20414700 | 754..825 | 100 | -> | Plus |
