UFO11365.5prime Sequence
1011 bp (956 high quality bases) assembled on 2012-04-23
> UFO11365.5prime
CAGTCGACATGGATTACAAATTCATTGTTTTCAACGCAGCGAGGGACAAC
AATTTGGCGCAGTTGAAGGCCACCCTTTACAACAAAAGCTCCGTCGAAGT
GGGCAGCCTGATATCGGCGAAAGTGAACGGAGCCACCCCGCTGGTCATCT
CCTGCCGCAATGGCCACTACGACATTGTAGAATACCTATTGACAAAATGT
CGGGCCAACGTGGAGCAGGTGGGATCGGTCAGTTTCGACGGGGAACCAAT
AGAGGATGCCCCACCGCTGTGGTGCGCTGCGGCCGCTGGCCACCTGGGCA
TCGTAAAGATGCTCGTCCGCCGAGGGGCGAATGTGAACAGTACCACCAGG
ACGAATTCCACACCGCTGCGAGCTGCCTGCTTCGATGGACACTACGAGAT
CGTCAAGTACCTGGTACACCATGGAGCAGACTTTGAGGTGGCGAACCGTC
ACGGCCACACCTGCTTGATGATCGCCTGCTACAAGGGTCACTTCCGCATC
GCCCAGTATCTGCTCTCCCTGAACGCCGATGTGAACCGCTGCAGCGTTAA
GGGCAACACGGCACTGCACGACTGCGCCGAGTCGGGCTCCTTGCAGATCC
TCCAGTTGCTGCTCAAGCACGGCGCCACCATGGACGTGGACTATTACGGA
ATGACTCCGCTGCTGGCGGCCAGTGTCACCGGTCACATGCCCATCGTGGA
GCACTTAATCACTTTGCCCTGTGTGAGCAGGGAATCGAGGATTCATGCTT
TGGAACTGCTAGGTGCCACGTATGTGGACCGAAAGCGGGACATGGCAGCG
GCACTAAACCTGTGGCGTCTAGCGCTCGAGGAGCGTGCCGTGGAAGCCAC
CGCTGGAGAAAATGTTCAGGAACCAGTGCCGGCATATGAGATGGTCGCGA
GTAACCAGCGTGAGGAGCTGGAGAAAATGGTTTTTGGATCTCGAATAAAT
GCGAATGCAGGCTCTGGTCATTCGGAGCCAATTTCTCGACCCACCATCCG
GAACACCACTA
UFO11365.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:39:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6966-RC | 4578 | CG6966-RC | 706..1708 | 9..1008 | 4595 | 97.8 | Plus |
| CG6966-RB | 3445 | CG6966-RB | 706..1708 | 9..1008 | 4595 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:39:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15082354..15082904 | 975..427 | 2330 | 97.3 | Minus |
| 3R | 32079331 | 3R | 15083119..15083481 | 429..67 | 1815 | 100 | Minus |
| 3R | 32079331 | 3R | 15094866..15094926 | 69..9 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:39:07 has no hits.
UFO11365.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-23 10:28:35 Download gff for
UFO11365.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6966-RB | 686..1675 | 9..995 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:23:12 Download gff for
UFO11365.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6966-RB | 686..1675 | 9..995 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:35:18 Download gff for
UFO11365.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6966-RB | 706..1695 | 9..995 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:35:18 Download gff for
UFO11365.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15082333..15082901 | 430..995 | 96 | <- | Minus |
| 3R | 15083119..15083479 | 69..429 | 100 | <- | Minus |
| 3R | 15094867..15094926 | 9..68 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:23:12 Download gff for
UFO11365.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10908055..10908623 | 430..995 | 96 | <- | Minus |
| arm_3R | 10908841..10909201 | 69..429 | 100 | <- | Minus |
| arm_3R | 10920589..10920648 | 9..68 | 100 | | Minus |
