UFO11368.5prime Sequence
1139 bp (1025 high quality bases) assembled on 2012-04-23
> UFO11368.5prime
CAGTCGACATGGAAACTGCCAGCAGCGTAAAAGGCAGTACAACCTCCCAA
ATCAGCTCCCTTCAATATAGCAGCGACATTAACGCCGATAGCCTCGAGCC
CGATCAATCTGAGGACTTTCAAACAGTCCTCGGCCTCAAGTATTTGCCAT
CCTGGCCAGCGGTAAATTTGCAGTTTTCGGAACTATGTTATGTGGTTCCC
GACCAGACCAATGCTTCAAAAACAAAGACGATTTTGCGGAGAGTCAATGG
AATGTTTCACTCTCACGAACTTACTGCGATTATAGGGCCTTCAGGCGCTG
GTAAAACCACACTGCTAAACCTGCTGGCGGGCTTTGGCGCCGTGTGCGAA
TCCGGCGAGATTTTGGTAAACAACAGTCCGCGAGATATGCGAGTCTTTCG
CAAAATGTCTCGATATATAATGCAGACTGATGTCCTGGACTCACAGTTTA
CCGTACTAGAAATGATGATTTTGGCGGCAAACTTGAAGTTGGGAAAAGAA
CTAAATTTAAAACAAAAGCTAGAAGTGATTGACGAAATTTTGGGAATGTT
GCGCCTAAAAGACACCCTAAACACCATGGCTCAAAAGCTATCTGGGGGTG
AGCGAAAGCGTTTATGCATTGCCCTTGAGCTGGTCAACAACCCACCTGTC
ATCTTTCTAGATGAACCTACAACTGGTTTAGACGATTTATCGAGTTCACA
ATGCATTGCCCTACTCAAAGTTTTGGCCGCCGGGGGGCGCACTGTGATCT
GCTCCATCCATACGCCATCTGCCAAGATCTTCGAGATGCTCGATGCAGTC
TACGTTCTAGCCGAAGGCCAGTGCGTCTACCAAGGAAAGGGGTCCAACAT
TGTACCTTTCTTGAAGAACTTTGGGCTTTGTTGTCCAATAACCTACAACC
CGGCTGACTTCATTATCGAAGTTGCTTGCCTTGAGTATGGCGGGTCCTAT
CACGAGCCAATGGTAGAAGCCGTGGGCAACGGCAAAGTTGCGCGATGGAG
TCCTCCAGCAGTGAAGGTGAACAACAACACAAACGACACCACATCGGGGC
ATCGTCGTTTACGAAAGGATCAGTTGACGAAAGAATAGCCTAACTTGGGA
GCAATGTTACCTGGTGGCTAAGTCAGGCCATTGCCTTGG
UFO11368.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:39:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4822-RF | 2885 | CG4822-RF | 600..1692 | 9..1090 | 5195 | 98.9 | Plus |
| CG4822-RE | 2749 | CG4822-RE | 355..1447 | 9..1090 | 5195 | 98.9 | Plus |
| CG4822-RB | 4008 | CG4822-RB | 1723..2815 | 9..1090 | 5195 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:39:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 118535..118874 | 1013..674 | 1700 | 100 | Minus |
| 2L | 23513712 | 2L | 119828..120032 | 213..9 | 1025 | 100 | Minus |
| 2L | 23513712 | 2L | 118931..119077 | 673..527 | 735 | 100 | Minus |
| 2L | 23513712 | 2L | 119431..119555 | 337..213 | 625 | 100 | Minus |
| 2L | 23513712 | 2L | 119134..119237 | 527..424 | 520 | 100 | Minus |
| 2L | 23513712 | 2L | 119288..119376 | 425..337 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:39:15 has no hits.
UFO11368.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-23 10:28:36 Download gff for
UFO11368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4822-RA | 168..1263 | 9..1093 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:23:17 Download gff for
UFO11368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4822-RB | 1723..2818 | 9..1093 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:35:22 Download gff for
UFO11368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4822-RB | 1723..2818 | 9..1093 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:35:22 Download gff for
UFO11368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 118931..119076 | 528..673 | 100 | <- | Minus |
| 2L | 118493..118874 | 674..1049 | 98 | <- | Minus |
| 2L | 119134..119235 | 426..527 | 100 | <- | Minus |
| 2L | 119288..119375 | 338..425 | 100 | <- | Minus |
| 2L | 119431..119554 | 214..337 | 100 | <- | Minus |
| 2L | 119828..120032 | 9..213 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:23:17 Download gff for
UFO11368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 118493..118874 | 674..1049 | 98 | <- | Minus |
| arm_2L | 118931..119076 | 528..673 | 100 | <- | Minus |
| arm_2L | 119134..119235 | 426..527 | 100 | <- | Minus |
| arm_2L | 119288..119375 | 338..425 | 100 | <- | Minus |
| arm_2L | 119431..119554 | 214..337 | 100 | <- | Minus |
| arm_2L | 119828..120032 | 9..213 | 100 | | Minus |
