UFO11370.5prime Sequence
935 bp (935 high quality bases) assembled on 2012-04-23
> UFO11370.5prime
CAGTCGACATGGTAGAAGGTGATTCCGCAAAGGGCAAAAGCGAATTCTAT
AATGTAGAAGCTGGACTACAACCGAACTACAACCAGAGCGCAGCAAGCAA
CCAAGCAAGCAACCATCCCACTGGCCAGGCCAACGCACCAGCCACCGGAA
ACGCGACTTCGCACATCGACAACCGAGCGATCATCCAGCCGTACTCCTTG
GGCACCGGACCCAAGCAGCCGGAGTATCAATTTGCGGCGGACAATCGCGG
CTACGAGCCGGACAGCCATGCCAATGGCAAGCAGCAGGACGTAGAGCGGG
ACGCCCCCGATGGGGGTCACGGGGGTCACGGGCCGCCCGGCAAGGGGGGC
AAGGGTGGTAAGGGACGCAAGAAGTCCGTACCCTTGCCGGAACCCACTGC
CCCAATAGTCGCCAATTTCGAGAGGGCCATCGAATTGTGCGGCTATGGCA
AGTTCCATTATATACTGCTGGCCATCTGCGGATTGGTCAGCACGTCCGAG
GAAATGGATGTCATATCCATGTCCTTCATTCTGCCATCGGCGGAGTGTGA
CCTGGATTTGAATACGGAGACCAAGGGCTGGCTGAACTCGATCATCTTCA
TCGGCATGATGGTGGGCGCTTACTTCTGGGGCAGCATCGCCGATAGCTTT
GGCCGCAAGAAGGTCCTCATCGTCATCTCGTTCATGAACGCCTTCTGCAT
CGTTGCGTCGTCCTTCTCGCAGACATACTCGTTCTTCATGCTGTTCCGCT
TCCTCAATGGTGCAGCTTTGGGCGGCAGTGGTCCTGTGATCTGGTCGTAC
TTCGCCGAATTCCAGCCCAAAGGCGAAGCGCGGCTCCATGCTGAGCTTCA
TGGCCGCCTTCCTGGACGTTTGGCAATCTGTTCGTGGCCCAGCTTGGGCC
TGGCTGATCCATCCCGCGAAACGATTGGCTTCACA
UFO11370.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:38:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3168-RG | 3762 | CG3168-RG | 316..1235 | 9..934 | 4480 | 99.4 | Plus |
| CG3168-RF | 3743 | CG3168-RF | 768..1687 | 9..934 | 4480 | 99.4 | Plus |
| CG3168-RE | 3375 | CG3168-RE | 400..1319 | 9..934 | 4480 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:38:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6723380..6724100 | 766..46 | 3605 | 100 | Minus |
| X | 23542271 | X | 6722531..6722692 | 934..767 | 540 | 96.4 | Minus |
| X | 23542271 | X | 6724209..6724245 | 45..9 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:38:36 has no hits.
UFO11370.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-23 10:28:30 Download gff for
UFO11370.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3168-RB | 257..1183 | 1..934 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:22:56 Download gff for
UFO11370.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3168-RE | 393..1319 | 1..934 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:35:03 Download gff for
UFO11370.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3168-RE | 393..1319 | 1..934 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:35:03 Download gff for
UFO11370.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6722531..6722692 | 767..934 | 96 | <- | Minus |
| X | 6723380..6724100 | 46..766 | 100 | <- | Minus |
| X | 6724209..6724250 | 1..45 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:22:56 Download gff for
UFO11370.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6616564..6616725 | 767..934 | 96 | <- | Minus |
| arm_X | 6617413..6618133 | 46..766 | 100 | <- | Minus |
| arm_X | 6618242..6618283 | 1..45 | 91 | | Minus |
