UFO11374.5prime Sequence
1143 bp (1042 high quality bases) assembled on 2012-04-23
> UFO11374.5prime
CAGTCGACATGCATGCAGAACTCAGCGAAATGGAGTTGCGCATAGTGGCG
CGACTAAACGAGGAGATCGGAAAGGATGCCAGCCAGCTACACCGGGCCAG
CCACCTCGTTAGCCACTACAAAAAGCACCTCCAAGTTTTGTCCCAAACGC
TCGACTACGAGGATCCCCAGAACGTGTCCTGCTACAAAACCGCCTTCCAA
TGCCAGCAACAGGTTTGCGAGAGCATCGACTTCGAGCTGGAAAAGCTGGC
TCACTTCGAGGACAAGCTGAAAAGAAAGCTAAAGGAGTGCCAGCCCGTGC
TTGAGGGAGTGGCAGAGGATTTAGACAAGGTGCGACAACTGCAGCGTTTG
CAACAGTATCTGCTCCTGGTGCAGGACATTCAGGAGATAAGCGCTGCCCT
AGGCAATGCCATCAATGGCAAGGACGAGGACAAACTGGTTAATATCTACC
TAACCCTCTACGAGGGCAACGACTGCGAGCACAGCGTAGTGGGTCGCCTG
CATGCTGTGCAGGCACAGTCGCTGAAATCCTTTGCCGAACGCACTGCCAT
CTACTGGCACAAGCTGCTCCTCAAGCGCCTGTCCAGCGCATTCGAGGCTG
TACTGAAGAGCATGCGCTGGGCGCATCTAGAACAGCAGGCCCTTAACTAT
TCGTCCGCACGAGACACTGCCAAGGCGCAACTGCTAGCGGAGTACATGTT
CCTCATCAAATCTCCAGCCGAAGAGCGGGCGCCACTGCAAAGCATCACGC
CCAGCATCGTGTGCCAGCCCATCAACCGGGTGGTGCAGCTCCTATTGGCG
CCGTATCGCCAGCGTTTCCAATTTCACTTCACAGGCACCAGACAAACCAA
TAGATTAGACAAGCCCGAGTGGTTCTATACGCAAATTCTCAACTGGGGCA
AGGAGACGCATTTCTTTGTAGGCAAAACATTTCAGCCAGCTGCCATTAAA
GCGGGTAAGCTGGACTACAATCTCAGCTGAGTTTATTCGAGACTGTGCAG
TTAGCCATGGAAAGTGGCGTGAACTAGAACAGATTGCCCAGACAGAATCT
ATTTGCCCATCTACTTGGAATGAGACGCTGCATCGATCGAGTACGGTAAA
ATTGGATCCGGCTAGTTCCAGCGCGGATTCTGTATCAACAACT
UFO11374.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:39:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rint1-RA | 2394 | CG8605-RA | 106..1255 | 5..1134 | 5075 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:39:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7323923..7324750 | 149..976 | 4140 | 100 | Plus |
| 2R | 25286936 | 2R | 1806868..1807354 | 751..263 | 2185 | 96.9 | Minus |
| 3L | 28110227 | 3L | 7323724..7323868 | 5..149 | 710 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:39:38 has no hits.
UFO11374.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-23 10:28:41 Download gff for
UFO11374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8605-RA | 93..1245 | 1..1134 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:23:30 Download gff for
UFO11374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8605-RA | 103..1255 | 1..1134 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:35:34 Download gff for
UFO11374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rint1-RA | 103..1255 | 1..1134 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:35:34 Download gff for
UFO11374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7323721..7323868 | 1..149 | 97 | -> | Plus |
| 3L | 7323924..7324755 | 150..982 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:23:30 Download gff for
UFO11374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7316821..7316968 | 1..149 | 97 | -> | Plus |
| arm_3L | 7317024..7317855 | 150..982 | 99 | -> | Plus |
