UFO11376.5prime Sequence
1144 bp (1039 high quality bases) assembled on 2012-04-23
> UFO11376.5prime
CAGTCGACATGATTAGTGAACGCCACAAGAGCCGCGATTTGGTTACGATA
CTTGGCCTGTTCCACCTCCTGCTCCTCGGATTCGCCTACGGCGACCATGT
GGTCGAGGTCTTGGCTCAATCAACAACCGCATCCACATCACAGCCGCAGA
CTTTGGAGACGATTGGCAGCCAGGATGGGGCTGCTCTGACGCCCGGTGCG
ACAACAGCTCCACGACTGGACCCGAACAACAACAACGAGTGGCGTCCTCT
TGGCCACGGGGATCCACTGCAAAAGGATCCCACCTACGACTACAGTCCGC
CGGCCTTGGATCGAGTACGCTACTGGGCGGAGAACAACAGCACTGGTCAA
AGTAATCCAGAGGCCAGGAAAAAGGAACTACCACCAGAGGTTCTTCGCAA
TAAAACGAAAAGTGAGGTACTGCTCCTTGGAGTGGCAAGTGATCGCGTTA
GGGTACCCCACTCCCATTCGTATCCACCAGTTGGTGGCTTAGGCCATTAT
CAGCAGCACCACCAGCAGCAGCAACAGCAGCAGCACCAGCAACAAGCTAA
ATATGCGGCCATCCGGAGGAGCTACTATGCTCCCACCCAGCAACAACATA
ACCCACAAATGCCACAGCATACACATGCCCAGCAGCACATGCCGCCTACC
CATTTGATGCCACCACCCATGATGATGATGAAATCAAGTGGTTCGTCCGT
TCCTCCCATGGAATACAGGCACAGTATGATGGCCACGGGAGCGCCCACCT
CTTACATGAGCCTCAACCATATGAGCTCTCCAACTACCAAACAAGCGATG
ACTTCCTCAGTGATTTACCATCAGCCACCAGCGATGAGCCACCACACCTC
ATTATCTTCTTCAACGCCTTGGATGACCAGTAGCCACAATATCGTTTTAT
CGTACTCAGATCCCCATCTGCAGGAATCGTTGCATACATACAGCTTTTCA
AGGCCCCATCACAGCAACGATGATCTACTCGCCCACTTCTTCTCCCAGGA
CATCAAATGGATCAAGGACGGTCTAGGAGCCGTTGCTCATGACCTACTCA
AAAAGAGGTTGGTGTAACGTCGAGCCCAGGTTAGCCACAATGCCAGTCAC
AAAATATTGGAGTAACACAGTAATCAGTCAACATTCTGGTGTGC
UFO11376.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:39:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13272-RB | 3251 | CG13272-RB | 447..1557 | 9..1108 | 5010 | 97.7 | Plus |
CG13272-RA | 3336 | CG13272-RA | 532..1642 | 9..1108 | 5010 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:39:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16813460..16814279 | 204..1021 | 3720 | 98.5 | Plus |
2L | 23513712 | 2L | 16811665..16811863 | 9..207 | 995 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 02:39:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2316..2500 | 495..675 | 220 | 61.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2379..2546 | 495..652 | 205 | 62.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6882 | 495..637 | 200 | 63.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2433 | 499..621 | 199 | 66.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6791..6918 | 495..625 | 196 | 64.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2337..2484 | 495..636 | 176 | 60.8 | Plus |
UFO11376.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-23 10:28:42 Download gff for
UFO11376.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13272-RA | 520..1651 | 1..1117 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:23:35 Download gff for
UFO11376.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13272-RA | 522..1653 | 1..1117 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:35:37 Download gff for
UFO11376.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13272-RA | 522..1653 | 1..1117 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:35:37 Download gff for
UFO11376.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16811655..16811863 | 1..207 | 98 | -> | Plus |
2L | 16813464..16814386 | 208..1117 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:23:35 Download gff for
UFO11376.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16811655..16811863 | 1..207 | 98 | -> | Plus |
arm_2L | 16813464..16814386 | 208..1117 | 96 | | Plus |