Clone UFO11376 Report

Search the DGRC for UFO11376

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:113
Well:76
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG13272-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO11376.5prime Sequence

1144 bp (1039 high quality bases) assembled on 2012-04-23

> UFO11376.5prime
CAGTCGACATGATTAGTGAACGCCACAAGAGCCGCGATTTGGTTACGATA
CTTGGCCTGTTCCACCTCCTGCTCCTCGGATTCGCCTACGGCGACCATGT
GGTCGAGGTCTTGGCTCAATCAACAACCGCATCCACATCACAGCCGCAGA
CTTTGGAGACGATTGGCAGCCAGGATGGGGCTGCTCTGACGCCCGGTGCG
ACAACAGCTCCACGACTGGACCCGAACAACAACAACGAGTGGCGTCCTCT
TGGCCACGGGGATCCACTGCAAAAGGATCCCACCTACGACTACAGTCCGC
CGGCCTTGGATCGAGTACGCTACTGGGCGGAGAACAACAGCACTGGTCAA
AGTAATCCAGAGGCCAGGAAAAAGGAACTACCACCAGAGGTTCTTCGCAA
TAAAACGAAAAGTGAGGTACTGCTCCTTGGAGTGGCAAGTGATCGCGTTA
GGGTACCCCACTCCCATTCGTATCCACCAGTTGGTGGCTTAGGCCATTAT
CAGCAGCACCACCAGCAGCAGCAACAGCAGCAGCACCAGCAACAAGCTAA
ATATGCGGCCATCCGGAGGAGCTACTATGCTCCCACCCAGCAACAACATA
ACCCACAAATGCCACAGCATACACATGCCCAGCAGCACATGCCGCCTACC
CATTTGATGCCACCACCCATGATGATGATGAAATCAAGTGGTTCGTCCGT
TCCTCCCATGGAATACAGGCACAGTATGATGGCCACGGGAGCGCCCACCT
CTTACATGAGCCTCAACCATATGAGCTCTCCAACTACCAAACAAGCGATG
ACTTCCTCAGTGATTTACCATCAGCCACCAGCGATGAGCCACCACACCTC
ATTATCTTCTTCAACGCCTTGGATGACCAGTAGCCACAATATCGTTTTAT
CGTACTCAGATCCCCATCTGCAGGAATCGTTGCATACATACAGCTTTTCA
AGGCCCCATCACAGCAACGATGATCTACTCGCCCACTTCTTCTCCCAGGA
CATCAAATGGATCAAGGACGGTCTAGGAGCCGTTGCTCATGACCTACTCA
AAAAGAGGTTGGTGTAACGTCGAGCCCAGGTTAGCCACAATGCCAGTCAC
AAAATATTGGAGTAACACAGTAATCAGTCAACATTCTGGTGTGC

UFO11376.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:39:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG13272-RB 3251 CG13272-RB 447..1557 9..1108 5010 97.7 Plus
CG13272-RA 3336 CG13272-RA 532..1642 9..1108 5010 97.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:39:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16813460..16814279 204..1021 3720 98.5 Plus
2L 23513712 2L 16811665..16811863 9..207 995 100 Plus
Blast to na_te.dros performed 2014-11-28 02:39:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2316..2500 495..675 220 61.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2379..2546 495..652 205 62.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..6882 495..637 200 63.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2308..2433 499..621 199 66.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6791..6918 495..625 196 64.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2337..2484 495..636 176 60.8 Plus

UFO11376.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-23 10:28:42 Download gff for UFO11376.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13272-RA 520..1651 1..1117 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:23:35 Download gff for UFO11376.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13272-RA 522..1653 1..1117 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:35:37 Download gff for UFO11376.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13272-RA 522..1653 1..1117 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:35:37 Download gff for UFO11376.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 16811655..16811863 1..207 98 -> Plus
2L 16813464..16814386 208..1117 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:23:35 Download gff for UFO11376.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16811655..16811863 1..207 98 -> Plus
arm_2L 16813464..16814386 208..1117 96   Plus