UFO11377.5prime Sequence
1167 bp (1009 high quality bases) assembled on 2012-04-23
> UFO11377.5prime
CAGTCGACATGAGCACCTGGAATCCGGAGAACGATGTGGACCTGCTGTCT
GGGTCCGAGGACGAGGAGGATGTGTCCATGAAGCGGGACTACCATGGGCG
CGAGGCCATTCTGTTCGTGGTAGACGCCAATCTTCAGACAGCCGGCGTGG
AGCGCCTGTTGGAGGCACTGAACATCATCCGGACGGCCTTTATATCCGGA
CTTCTGGTTAACGACAAGGACCTCATCGGACTCATCTTCGCCAACACCAA
GCACAGTCCGCCGCCGCTGGAAGCCAGTGCATTGGACAACATCGTAATGC
CGGATAACTGCGCAGTGTTCTTGCCCCTTCGCCAACTAACCAAACCCATT
GTGGAGCACTATCTGGAATTCATGGGCGGGGTGGAGACGCAGTTCGCCGA
TGTGTATGGCCTGGCGGAACCCGATGGTCGCGGCAGGTTTGACCTTATGA
TCCGGCTCTGCATCGAGATGCTGGAAAAGTGCGGCAAGAAGCTAAACAAC
GCCAAGATCGCCTATGTCACGGACGTCAGGGAACCTCATCCATCGAACAG
CAATCACTTCCAGGCTGCCCTGCAAAAGGCCAGCGATCTGGAGGGCAAGG
AGTTCGAGTTTCATGTCATTCCCATGGTCGATGACTTTGACTACGAGCCG
TTTTACAAGGAGTTCATCACGTTGTCAAGAGCTATCGAACTGGACGCCTT
CCAGGTGCCAGATGCCCAGATGCTGCGCGAAATCCTGTCCGATCGTAAGT
TGAAGCACGATTTCCTTCGCCGATGCCTGGGCCACTTCAGTTTTTATCTG
GGCCCCAACCTATCCATGTCCGTACAGTACTACAATTACTTTCAGCGACG
CGCCTATCCGCGCAAGTGCAAATCCTGCGCAGGGACAACAGTGTGGTGCG
TACTAAGCGAGTGATTACGTGCAAAAACAAAAGGACGATGGCTCGCAGAT
ATCGAGCACGAGTATCAGATTAGTGACGGGCGTTGTACACCTTGCACGTG
GGCGAAAGGGATCTGCGCCATCAGCATGATCAGTTGAACAGGTGCGCAAT
CTGCACAAGCCGCAATGATGCTGCTGGCTCAAGCATCGATTCCTCTCTTC
CGAAGTTAGCTAACTCAAGCAAGGAATCCAAGGTAACCCGATGATCCGAG
CATCTATCGGAATCGAA
UFO11377.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:39:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Irbp-RA | 2149 | CG5247-RA | 92..1260 | 9..1167 | 5230 | 97.4 | Plus |
| Irbp-RB | 2048 | CG5247-RB | 92..827 | 9..744 | 3680 | 100 | Plus |
| Irbp-RB | 2048 | CG5247-RB | 828..1159 | 846..1167 | 1060 | 91.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:39:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11410138..11410810 | 9..681 | 3365 | 100 | Plus |
| 3R | 32079331 | 3R | 11411054..11411540 | 680..1154 | 1510 | 93.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:39:50 has no hits.
UFO11377.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-23 10:28:43 Download gff for
UFO11377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irbp-RA | 87..1259 | 1..1167 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:23:37 Download gff for
UFO11377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irbp-RA | 88..1260 | 1..1167 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:35:38 Download gff for
UFO11377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irbp-RA | 88..1260 | 1..1167 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:35:38 Download gff for
UFO11377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11411056..11411551 | 682..1167 | 94 | | Plus |
| 3R | 11410134..11410810 | 1..681 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:23:37 Download gff for
UFO11377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7236778..7237273 | 682..1167 | 94 | | Plus |
| arm_3R | 7235856..7236532 | 1..681 | 99 | -> | Plus |
