UFO11379.5prime Sequence
1116 bp (1017 high quality bases) assembled on 2012-04-23
> UFO11379.5prime
CAGTCGACATGGATGAGCAGCATCAGAACCTCAATCAAAATGGCAGCGAA
TCCAATGGTAAGCAGGCCAGGATCGTTTCGGGACTTGATCGTCTGCTGAA
GACTCCTCCGCCTGGCGAACAGACAAGAGCAGTGCGGCGACAAGTGATCG
CTGTTATCCTGGCCAACGTGGGTGTCTTCTCAACGGGAATGACCCTGGCC
ATGCCCACCGCCACTCTGCATCAGCTGAAGGACACCACGGAGCCAGTGCA
TCTGAACGATTCGCAGGCTTCCTGGTTCGCATCGGTAAACGCTCTGTCCG
CTCCTATAGGCGGCTTGCTGTCCGGTTTCTTGCTTGACAGGATTGGAAGG
AAGAAATCCCTGATAGTGCTCAATGTACTGATTATTCTTGCTTGGATTCT
GCTGGCCACACCCAGTGAGAGCGACCAAAATGCCTTCTTTTGGCAACTAA
TTGTCTCACGATTTATGCTGGGTGTTGGTATGGGACTGGCCAGTGCGCCA
CCAGGAGTCTATGCAGCCGAGATCAGTGTGCCCAAGACGAGGGGCAGTCT
TATACTGGGCACATCCATTTCAGTGGCCGGTGGCATAACGATTCTCTACG
GAATTGGTTACTGCATCCGCGATGATTTCCGACTGATTGCCCTCATCTGC
TGTGGCTACCAGCTGGTGGCCCTGCTCTGCGTGCTGCCACTTCCGGAAAG
TCATTGCTGGCTTCTGTCCAAGAAGCGTGTGACGGAGGCGAAGAGATCAC
TTAACTACTTCCGTGGATTCAACAAATCGGATGAAATCACCCATCCCCAA
GTGCTCGAAGAGTTCCAGCTTCTGCAGAAATCCCTGCAGCAAAGGACACC
GCGGTGAAAGGAGTCCTTTTGGCGTAATCTGCACGAACCGGAGGTCTACA
AGCCATTGGTCATCCTGATGAGCTTGTTCGCCTTCCAGCAGCTAACCGGA
TCTTTTGTGGTCATCGTCTCGCGTGCAAATTTCCCAGAGCGGCATCGAAT
CGATCCCTTCATGTGCGCGTGCTCATGTTGCTCGCTGATCACACCTGCCC
ATGAATCTCTGTATGGTGGTTCGCGATGCCAGGATATCTCCATTTGGGCC
AGTCCGTGGCAGTTCC
UFO11379.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:39:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8249-RC | 3283 | CG8249-RC | 260..1314 | 9..1050 | 4865 | 98.3 | Plus |
| CG8249-RB | 2094 | CG8249-RB | 409..1463 | 9..1050 | 4865 | 98.3 | Plus |
| CG8249-RA | 1945 | CG8249-RA | 260..1314 | 9..1050 | 4865 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:39:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15845682..15846146 | 473..9 | 2325 | 100 | Minus |
| 2R | 25286936 | 2R | 15845300..15845613 | 784..471 | 1555 | 99.7 | Minus |
| 2R | 25286936 | 2R | 15844768..15845012 | 1018..780 | 815 | 93.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:39:55 has no hits.
UFO11379.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-23 10:28:44 Download gff for
UFO11379.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8249-RA | 258..1296 | 9..1036 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:23:38 Download gff for
UFO11379.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8249-RA | 260..1298 | 9..1036 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:35:40 Download gff for
UFO11379.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8249-RA | 260..1298 | 9..1036 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:35:40 Download gff for
UFO11379.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15844768..15845011 | 781..1018 | 95 | <- | Minus |
| 2R | 15845304..15845612 | 472..780 | 100 | <- | Minus |
| 2R | 15845684..15846146 | 9..471 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:23:38 Download gff for
UFO11379.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11732273..11732516 | 781..1018 | 95 | <- | Minus |
| arm_2R | 11732809..11733117 | 472..780 | 100 | <- | Minus |
| arm_2R | 11733189..11733651 | 9..471 | 100 | | Minus |
