UFO11380.5prime Sequence
1146 bp (996 high quality bases) assembled on 2012-04-23
> UFO11380.5prime
CAGTCGACATGGATGTGGAAGAGTTTCGCAAATACGGCAAGGAAGTGATT
GATTATATATGCCAATACGGCACTAATATAGAGGAGCGTGACGTGGCGCC
CACCTTGGATCCGGGTTACCTCAAAAAACTGCTACCAGCCGACGCTCCCC
AGTCGCCGGAGCCGTTCAAGGACGTGCTCGAGGACTTCGAGCAGAAGATC
ATGCCGGGCGTGGTGCACTGGAACCACCCCAAGTTCTTCGCCTACTTCCC
CTCGGGCAACTCTTTTCCATCGGTCCTAGGCGACATGCTCAGCAGTGCCA
TTGGTTCAATTGGCTTCAGCTGGGCCAGCTGTCCGGCGGCTGCCGAGCTG
GAGACGATCGTGATGAACTGGTACGCCAAGGCCCTTGGCCTGCCCAAGGC
CTTTGTTTCGGATGCCCCAGGCAGTACAGGCGGCGGCGCCCTTCAGGGAT
CCGCCTCAGAGTGCGTTCTCGTCTCTCTAATCACAGCCCGCGCCCGGGCC
ATCAGCGAGCTAAAGGGTCAGACCAGCGTTCACGACAGCGTCTTCCTGCC
CAGCCTGATCGCATACGCCAGCCGTGAGGCACACTCCTCCGTGGAAAAGG
CCACCAAGATGGCCCTGGTGAAGCTCCGGATAATCGATGCCGACGAGCAT
GGACGCATGCGCGTTGACCTACTCCGCCAAGCAATTCAAAACGATGTGAA
CGCCGGCTTGACACCCTTCTTTGTAGTGGCCACTGTGGGTACCACCGGCG
GCTGCGCTTTCGACGACATCACGGAGATCGGAAAGGTGTGCCGCCAGGTG
TCGAGCATTTGGCTGCACGTAGACGGCGCCTATGCGGGAAACTCCTTCAT
TCTGCCCGAGATGCGGGTCTTTTCGGCAGGACTCGATACGCCGACTCCTT
CACACAAATCCCAACAAGCTTCTGCTGACGAACTTCGATGCCTTTGCCCT
GTGGGTGCGGGATTTGATGACTTAGAGCGGCGCTCACGTGAATCCCCTCT
ACCTACGACACGAGCACTTGACGGAGTGACTACCGCCACTACGGCATCCC
CCTGAATCGCGATTCGGCACTCAAGCTGGTGGTTCGTCCTCGACATACGG
CATTCGGGACCTACAGGATCATTCGAATCTATTGGGCGTTGGCTAA
UFO11380.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:39:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tdc1-RA | 2281 | CG30445-RA | 213..1363 | 9..1146 | 5205 | 97.7 | Plus |
| Tdc2-RA | 2303 | CG30446-RA | 965..1121 | 808..962 | 210 | 78 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:39:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6678071..6679065 | 1118..135 | 4270 | 97.6 | Minus |
| 2R | 25286936 | 2R | 6680050..6680179 | 138..9 | 650 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:39:58 has no hits.
UFO11380.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-23 10:28:44 Download gff for
UFO11380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tdc1-RA | 201..1358 | 2..1146 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:23:41 Download gff for
UFO11380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tdc1-RA | 206..1363 | 2..1146 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:35:42 Download gff for
UFO11380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tdc1-RA | 206..1363 | 2..1146 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:35:42 Download gff for
UFO11380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6678041..6679061 | 139..1146 | 97 | <- | Minus |
| 2R | 6680050..6680184 | 2..138 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:23:41 Download gff for
UFO11380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2565546..2566566 | 139..1146 | 97 | <- | Minus |
| arm_2R | 2567555..2567689 | 2..138 | 97 | | Minus |
