Clone UFO11382 Report

Search the DGRC for UFO11382

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:113
Well:82
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/Transcriptapp-RL
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO11382.5prime Sequence

1088 bp (997 high quality bases) assembled on 2012-04-23

> UFO11382.5prime
CAGTCGACATGAATCTGCTGTGCTGCTGTTGTTGCAGTAACATGGCACCA
AACCAACGCGTCACACGCAAATGGGAACTGTTTGCCGGACGCAATAAATT
CTACTGCGATGGATTGCTAATGTCCGCACCGCACACAGGCGTCTTCTACT
TGACGTGCATCCTGATTACCGGCACCAGTGCGCTCTTCTTTGCCTTCGAC
TGTCCCTTTCTGGCGGACAGCATAAATCCGGCCATTCCGATTGTGGGAGC
GGTACTATACTTCTTCACGATGAGCTCCTTGCTGCGCACAACCTTCACGG
ATCCGGGCGTCATACCGCGAGCCTCCAACGATGAGGCCGCCTATATTGAA
AAGCAAATAGAGGTGCCAAACTCGCTGAACAGTCCCACATATCGACCGCC
GCCGAGGACCAAGGAGGTCCTGGTCAAAGGACAAACGGTCAAGCTGAAAT
ACTGTTTCACCTGCAAGATCTTCCGGCCGCCGAGGGCCTCGCACTGCAGC
CTGTGCGACAACTGCGTGGACCGCTTCGATCACCACTGTCCCTGGGTGGG
AAACTGCGTGGGCAAGCGGAATTATCGGTTCTTTTATTTGTTTCTAGTCT
CATTGGCATTTTTAGCTGTATTTATATTCTCGTGCTCTGTGACGCATTTA
GTTTTATTGATGAAGAAGGAGCACGAGGTCTTTAATGTAATCAAGGCGGC
GCCCTTCACTGTGATTGTTGTGTTCATTTGCTTCTTCTCGATATGGTCGG
TGATCGGCCTGGCCGGCTTCCATACCTATCTGACGACTAGCGATCAGACA
ACCAACGAGGATCTCAAGGGATCCTTCTCCTCCAAAGGCGGTCCACGCAC
CCAAAATCCCTATTCGCGGGGTAACATTTGCCTGAACTGCTTGTCCACAT
CCTGTGCGGACCATGACCGCCCTCGCTGATCGATAAGACGCGGCATCGCC
ACCGACGAGTTCATCCAGCAGATGCAGCACAGTCGAGTTCGCGGCACGCA
CTGACGATGTGCTGAGTGCCTCGCACATGTCCACACCCTCGCAGCCCATG
ATGGGTGGTTTTAGGGTGGTGGTGGCACTCGTGTAGCA

UFO11382.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:39:23
Subject Length Description Subject Range Query Range Score Percent Strand
app-RR 4156 CG42318-RR 1211..2276 9..1077 5060 98.7 Plus
app-RO 4422 CG42318-RO 1592..2657 9..1077 5060 98.7 Plus
app-RM 4537 CG42318-RM 1592..2657 9..1077 5060 98.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:39:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12215615..12215805 548..358 955 100 Minus
3L 28110227 3L 12219978..12220168 199..9 955 100 Minus
3L 28110227 3L 12216419..12216579 360..200 805 100 Minus
3L 28110227 3L 12213719..12213873 812..658 775 100 Minus
3L 28110227 3L 12213940..12214052 657..545 565 100 Minus
3L 28110227 3L 12213172..12213299 1061..936 465 94.5 Minus
3L 28110227 3L 12213355..12213475 935..813 445 92.7 Minus
Blast to na_te.dros performed on 2014-11-28 02:39:22 has no hits.

UFO11382.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-23 10:28:38 Download gff for UFO11382.5prime
Subject Subject Range Query Range Percent Splice Strand
app-RI 1538..2611 5..1087 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:23:21 Download gff for UFO11382.5prime
Subject Subject Range Query Range Percent Splice Strand
app-RM 1590..2663 5..1087 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:35:26 Download gff for UFO11382.5prime
Subject Subject Range Query Range Percent Splice Strand
app-RM 1590..2663 5..1087 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:35:26 Download gff for UFO11382.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 12219978..12220170 5..199 98   Minus
3L 12215618..12215802 361..545 100 <- Minus
3L 12213148..12213297 938..1087 91 <- Minus
3L 12213354..12213475 813..937 96 <- Minus
3L 12213719..12213873 658..812 100 <- Minus
3L 12213940..12214051 546..657 100 <- Minus
3L 12216419..12216579 200..360 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:23:21 Download gff for UFO11382.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12208718..12208902 361..545 100 <- Minus
arm_3L 12209519..12209679 200..360 100 <- Minus
arm_3L 12213078..12213270 5..199 98   Minus
arm_3L 12206248..12206397 938..1087 91 <- Minus
arm_3L 12206454..12206575 813..937 96 <- Minus
arm_3L 12206819..12206973 658..812 100 <- Minus
arm_3L 12207040..12207151 546..657 100 <- Minus