UFO11382.5prime Sequence
1088 bp (997 high quality bases) assembled on 2012-04-23
> UFO11382.5prime
CAGTCGACATGAATCTGCTGTGCTGCTGTTGTTGCAGTAACATGGCACCA
AACCAACGCGTCACACGCAAATGGGAACTGTTTGCCGGACGCAATAAATT
CTACTGCGATGGATTGCTAATGTCCGCACCGCACACAGGCGTCTTCTACT
TGACGTGCATCCTGATTACCGGCACCAGTGCGCTCTTCTTTGCCTTCGAC
TGTCCCTTTCTGGCGGACAGCATAAATCCGGCCATTCCGATTGTGGGAGC
GGTACTATACTTCTTCACGATGAGCTCCTTGCTGCGCACAACCTTCACGG
ATCCGGGCGTCATACCGCGAGCCTCCAACGATGAGGCCGCCTATATTGAA
AAGCAAATAGAGGTGCCAAACTCGCTGAACAGTCCCACATATCGACCGCC
GCCGAGGACCAAGGAGGTCCTGGTCAAAGGACAAACGGTCAAGCTGAAAT
ACTGTTTCACCTGCAAGATCTTCCGGCCGCCGAGGGCCTCGCACTGCAGC
CTGTGCGACAACTGCGTGGACCGCTTCGATCACCACTGTCCCTGGGTGGG
AAACTGCGTGGGCAAGCGGAATTATCGGTTCTTTTATTTGTTTCTAGTCT
CATTGGCATTTTTAGCTGTATTTATATTCTCGTGCTCTGTGACGCATTTA
GTTTTATTGATGAAGAAGGAGCACGAGGTCTTTAATGTAATCAAGGCGGC
GCCCTTCACTGTGATTGTTGTGTTCATTTGCTTCTTCTCGATATGGTCGG
TGATCGGCCTGGCCGGCTTCCATACCTATCTGACGACTAGCGATCAGACA
ACCAACGAGGATCTCAAGGGATCCTTCTCCTCCAAAGGCGGTCCACGCAC
CCAAAATCCCTATTCGCGGGGTAACATTTGCCTGAACTGCTTGTCCACAT
CCTGTGCGGACCATGACCGCCCTCGCTGATCGATAAGACGCGGCATCGCC
ACCGACGAGTTCATCCAGCAGATGCAGCACAGTCGAGTTCGCGGCACGCA
CTGACGATGTGCTGAGTGCCTCGCACATGTCCACACCCTCGCAGCCCATG
ATGGGTGGTTTTAGGGTGGTGGTGGCACTCGTGTAGCA
UFO11382.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:39:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
app-RR | 4156 | CG42318-RR | 1211..2276 | 9..1077 | 5060 | 98.7 | Plus |
app-RO | 4422 | CG42318-RO | 1592..2657 | 9..1077 | 5060 | 98.7 | Plus |
app-RM | 4537 | CG42318-RM | 1592..2657 | 9..1077 | 5060 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:39:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12215615..12215805 | 548..358 | 955 | 100 | Minus |
3L | 28110227 | 3L | 12219978..12220168 | 199..9 | 955 | 100 | Minus |
3L | 28110227 | 3L | 12216419..12216579 | 360..200 | 805 | 100 | Minus |
3L | 28110227 | 3L | 12213719..12213873 | 812..658 | 775 | 100 | Minus |
3L | 28110227 | 3L | 12213940..12214052 | 657..545 | 565 | 100 | Minus |
3L | 28110227 | 3L | 12213172..12213299 | 1061..936 | 465 | 94.5 | Minus |
3L | 28110227 | 3L | 12213355..12213475 | 935..813 | 445 | 92.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:39:22 has no hits.
UFO11382.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-23 10:28:38 Download gff for
UFO11382.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
app-RI | 1538..2611 | 5..1087 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:23:21 Download gff for
UFO11382.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
app-RM | 1590..2663 | 5..1087 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:35:26 Download gff for
UFO11382.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
app-RM | 1590..2663 | 5..1087 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:35:26 Download gff for
UFO11382.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12219978..12220170 | 5..199 | 98 | | Minus |
3L | 12215618..12215802 | 361..545 | 100 | <- | Minus |
3L | 12213148..12213297 | 938..1087 | 91 | <- | Minus |
3L | 12213354..12213475 | 813..937 | 96 | <- | Minus |
3L | 12213719..12213873 | 658..812 | 100 | <- | Minus |
3L | 12213940..12214051 | 546..657 | 100 | <- | Minus |
3L | 12216419..12216579 | 200..360 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:23:21 Download gff for
UFO11382.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12208718..12208902 | 361..545 | 100 | <- | Minus |
arm_3L | 12209519..12209679 | 200..360 | 100 | <- | Minus |
arm_3L | 12213078..12213270 | 5..199 | 98 | | Minus |
arm_3L | 12206248..12206397 | 938..1087 | 91 | <- | Minus |
arm_3L | 12206454..12206575 | 813..937 | 96 | <- | Minus |
arm_3L | 12206819..12206973 | 658..812 | 100 | <- | Minus |
arm_3L | 12207040..12207151 | 546..657 | 100 | <- | Minus |