UFO11383.5prime Sequence
1113 bp (1007 high quality bases) assembled on 2012-04-23
> UFO11383.5prime
CAGTCGACATGTTGACCATGTTGTCCGTGAACCAAGATAACGGTCCACAC
CGTGAGATGGCCGTCGATTGTCCGGACACGTTCATCGCACGCAACAAGAC
GCCACCCCGATATCCGCCACCCCGTCCACCACAGCTCAATGGGAATGCGA
AGCCCGTACCGCCGCCACGTGATCATCTGCGGGTGGAGAAGGATGGTCGG
CTGGTCAATTGCTCACCCGCACCACAGCTGCCGGATCGCAGGGCGCCGGG
AAATGCGAGCAGCGGCAGCAGCGGCGCCACAACGCATCCGCTGCAGCATC
AGCAGATCGCCCAGATTGTTGAGCCCACATTGGAGCAGCTGGACAGCATC
AAGAAATACCAGGAGCAACTGCGCCGACGACGCGAGGAGGAGGAGCGCAT
AGCGCAGCAAAATGAATTCCTGCGGAACAGTCTTCGTGGCTCCAGGAAGC
TGAAGGCGCTTCAGGATACGGCTACGCCCGGTAAAGCGGTTGCCCAGCAG
CAGCAGCAGGCAACGCTGGCCACCCAGGTGGTTGGCGTGGAGAATGAGGC
ATATCTGCCCGACGAAGACCAGCCGCAGGCGGAACAGATCGATGGCTATG
GCGAACTGATAGCGGCCCTTACCCGCCTGCAAAACCAGCTGAGCAAGAGC
GGACTGAGCACGCTGGCGGGTCGCGTTTCGGCCGCCCACAGTGTCCTGGC
CAGCGCCAGTGTGGCCCATGTCCTGTCCGCTCGCACCGCAGTACTGCAGC
GACGACGTTCCCGCGTCTCTGGTCCACTGCATCACAGTTCCCTCGGATTG
CAGAAAGGACATTGTGGAGCTGCTAACGCAATCGAATACGCGGCGGCCAT
CGAGCTGGGCAACCTGCTGACCAGCCATGAAATGGAGGGTCTGCTACTGG
GCCCACGATCGCATTGCCAATCACACGGATGGCACGCCCTTCGCCAACGC
CTCGCCTACTCCTGCAATGGAGCGCGACGGGATCGACACTCAGCAGTTCG
GTGGCCTGACCCAAGAGAAATCTAAGTATGTGGTGCCCACCGGCCGTTGT
ACCACCGCCAACTGAGCCAACGCGAACATGCCACTGGCCTCGCGGGAATC
GCACGCGGTCCAA
UFO11383.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:39:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sdt-RF | 4482 | CG32717-RF | 922..2010 | 9..1096 | 4940 | 97.6 | Plus |
| sdt-RH | 4017 | CG32717-RH | 457..1545 | 9..1096 | 4940 | 97.6 | Plus |
| sdt-RP | 6968 | CG32717-RP | 2361..3449 | 9..1096 | 4940 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:39:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8235881..8236348 | 594..1060 | 1780 | 95.3 | Plus |
| X | 23542271 | X | 8235586..8235821 | 360..595 | 1180 | 100 | Plus |
| X | 23542271 | X | 8227866..8228099 | 130..363 | 1170 | 100 | Plus |
| X | 23542271 | X | 8223955..8224047 | 42..134 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:39:26 has no hits.
UFO11383.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-23 10:28:39 Download gff for
UFO11383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sdt-RA | 393..523 | 1..133 | 97 | -> | Plus |
| sdt-RA | 1824..2763 | 134..1074 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:23:23 Download gff for
UFO11383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sdt-RP | 2355..3426 | 1..1074 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:35:29 Download gff for
UFO11383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sdt-RP | 2355..3426 | 1..1074 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:35:29 Download gff for
UFO11383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8223827..8223866 | 1..42 | 92 | -> | Plus |
| X | 8223956..8224047 | 43..134 | 100 | -> | Plus |
| X | 8227871..8228098 | 135..362 | 100 | -> | Plus |
| X | 8235589..8235820 | 363..594 | 100 | -> | Plus |
| X | 8235882..8236336 | 595..1049 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:23:23 Download gff for
UFO11383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8117860..8117899 | 1..42 | 92 | -> | Plus |
| arm_X | 8117989..8118080 | 43..134 | 100 | -> | Plus |
| arm_X | 8121904..8122131 | 135..362 | 100 | -> | Plus |
| arm_X | 8129622..8129853 | 363..594 | 100 | -> | Plus |
| arm_X | 8129915..8130369 | 595..1049 | 95 | -> | Plus |
