UFO11384.5prime Sequence
899 bp (899 high quality bases) assembled on 2012-04-23
> UFO11384.5prime
CAGTCGACATGCACCAGATGACCAACGTTCCCGGCTTCGTAAACCTGTCG
TGCACCTTCCAGGACCAGCGTTCTCTTTACTTTGTGATGACGTACGCGCG
AAAGGGCGACATGTTGCCATACATCAACCGCGTGGGTAGCTTTGACGTGG
CCTGCACGCGCCACTACGCTGCCGAGCTTCTGCTGGCCTGCGAGCACATG
CACCGCCGTAATGTGGTGCACCGCGACCTCAAGCCCGAGAACATCCTGCT
CGACGAGGACATGCACACGCTAATCGCCGACTTCGGTTCCGCCAAGGTGA
TGACAGCCCACGAAAGGGCTCTGGCCACGGAGCACTGTTCGGAGCAGCGG
CGCAGCAACTCCGATGAAGACGATGAAGACAGCGACCGCCTGGAAAACGA
AGACGAAGACTTCTACGATCGCGATTCGGAGGAGTTGGACGACGGCGACG
ACGAACAGCAGCAGGAAGAGATGGACTCCCCACGCCATCGTCAAAGGCGT
TACAACCGTCACCGAAAGGCAAGCTTTGTGGGCACTGCCCAGTACGTTTC
ACCGGAAGTGCTCCAAAATGGACCTATAACCCCGGCGGCGGACCTGTGGG
CACTGGGATGTATAGTTTTATCAGATGATCGCCGGCCTACCGCCATTCCG
TGGCAGCAACGATTATGTCATTTTTAAAGAGATTCTTGACTGCGCCGTGA
CTTCCCGCAAGGCTTTGATAAGACGCCGAGGACCTGTGCGCAAGCTGCTC
CGTGTCGATCCGCGAGACCGCCTGGGTGCTCAGACGAGTTTGGATATACG
AATCCATTCGGGCCGCACCCATTCTTCGCCGGCATTGACTGGCAGACGCT
CCGTCACATAACCCCCTCCCCCCCATCTACCCATACTTACCGGGGCGTA
UFO11384.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:39:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pdk1-RJ | 4959 | CG1210-RJ | 1265..2151 | 9..894 | 4200 | 98.8 | Plus |
| Pdk1-RF | 4162 | CG1210-RF | 1070..1956 | 9..894 | 4200 | 98.8 | Plus |
| Pdk1-RH | 4347 | CG1210-RH | 1255..2141 | 9..894 | 4200 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:39:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 141841..142727 | 9..894 | 3980 | 98.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:39:31 has no hits.
UFO11384.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-23 10:28:39 Download gff for
UFO11384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pk61C-RB | 374..1266 | 3..898 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:23:26 Download gff for
UFO11384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdk1-RF | 1067..1959 | 3..898 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:35:31 Download gff for
UFO11384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdk1-RH | 1252..2144 | 3..898 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:35:31 Download gff for
UFO11384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 141838..142730 | 3..898 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:23:26 Download gff for
UFO11384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 141838..142730 | 3..898 | 98 | | Plus |
