UFO11389.5prime Sequence
1116 bp (1011 high quality bases) assembled on 2012-04-23
> UFO11389.5prime
CAGTCGACATGAATAATAGCGAGGAAATCTGCACAGACAGTTTAACTTTA
CGCGGCTTTGAGGAGTACACCGTGAATGACTATAGTCTGGGTGGCATAAT
CGAGGAGAATCGCTTTTATATTGTGGCCCCAAAGGATATTGTGGTAGCTA
GTCTTATTGAAACAGATGATCGTATAGAATGGTTGATTAAACACAGTAAA
TTTGAGGAGGCAATGGAACTTATATCTGCGAATGGAGGTAACGTTCCCGT
ACTTTCCGTTGCTAAACTTTATATCAACCATTTACTGGCGCTTAAGAAGT
ATGATGACGCAGCAAAACTTTGCCTCCGCATGCTAGGCAATGACAAAGTC
CTTTGGGAAGAGGAAGTTTTTAAGTTTGTAAAGTGTCAGCAGCTACGATC
AGTTAGCGCCTATCTGCCGACTTCAGACGAATGCAAACTTGATCCCCATG
TATACGAAATGGTTTTATACGAGTTTCTCAAATTTGATGTATGTGGTTTC
CTGAATCTTATCAAGGAATGGCCATCTCATCTTTATGACGGCCTGGCTGT
TATTAACGCTATTCACGATAACTTTCGAAAGCACTATGCCAATCAGTTGC
TGGAATCATTGGCTCTTTTGTATTCCTATCAAGGCGACTTCGAAAGTGCT
CTTCGCATGTATTTAAAGTTGCAGAACAAGGATGTCTTCCAATTAATTCG
ACGGTATGAGCTTTACGATGTCATTTCAAAACTGATTATTCCACTTATTC
AATTGGATCGTGACTGCGCCTTTGAAATACTACTTGACAAGAAAAAAATA
AAGACTGAGATAGTTGTCCACCAGCTAGAGCACATCAAGAGTACCTGTAC
TGATACTTAGATTCTTTACTTAAAAAGGATCCCAGTAATGTGTTTCAAAA
AACTTATCTCTTATATGCCATTTTCGATCGAAACAAACTATGCCTTTCTA
AGCGTTCAAGGACTATGACATTCAGGAGGCGTTGGTCATATGCAAACAGG
AAAACTTTTATCAGAAATAGTCTACTGCTCGGTGTATGGGTGGCGTAGAG
CGTCGAGCACTATATTATTTATTCATCGCATCAGAACATAGAATGGCCAT
AAGTGGCAGACCGATG
UFO11389.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:40:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lt-RF | 5316 | CG18028-RF | 1041..2150 | 9..1101 | 5085 | 98.2 | Plus |
| lt-RE | 4404 | CG18028-RE | 1041..2150 | 9..1101 | 5085 | 98.2 | Plus |
| lt-RC | 2760 | CG18028-RC | 1093..2202 | 9..1101 | 5085 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:40:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 22938904..22939307 | 266..669 | 2020 | 100 | Plus |
| 2L | 23513712 | 2L | 22927578..22927765 | 9..196 | 940 | 100 | Plus |
| 2L | 23513712 | 2L | 22939354..22939539 | 668..852 | 880 | 99.5 | Plus |
| 2L | 23513712 | 2L | 22939595..22939800 | 854..1049 | 585 | 94.7 | Plus |
| 2L | 23513712 | 2L | 22938772..22938842 | 195..265 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:40:14 has no hits.
UFO11389.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-23 10:28:47 Download gff for
UFO11389.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lt-RB | 1044..2157 | 9..1104 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:23:50 Download gff for
UFO11389.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lt-RB | 1036..2149 | 9..1104 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:35:48 Download gff for
UFO11389.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lt-RC | 1093..2206 | 9..1104 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:35:48 Download gff for
UFO11389.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 22938904..22939305 | 266..667 | 100 | -> | Plus |
| 2L | 22938774..22938842 | 197..265 | 100 | -> | Plus |
| 2L | 22939354..22939540 | 668..853 | 98 | -> | Plus |
| 2L | 22939595..22939822 | 854..1069 | 93 | -> | Plus |
| 2L | 22927578..22927765 | 9..196 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:23:50 Download gff for
UFO11389.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 22831506..22831574 | 197..265 | 100 | -> | Plus |
| arm_2L | 22820310..22820497 | 9..196 | 100 | -> | Plus |
| arm_2L | 22831636..22832037 | 266..667 | 100 | -> | Plus |
| arm_2L | 22832086..22832272 | 668..853 | 98 | -> | Plus |
| arm_2L | 22832327..22832554 | 854..1069 | 93 | -> | Plus |
