UFO11395.5prime Sequence
1117 bp (1007 high quality bases) assembled on 2012-04-23
> UFO11395.5prime
CAGTCGACATGACCAAGGTGCAAAAAGAGGTGCGATGCGACCATTGCGGC
ACAAGCCAAGGGTCCAAGAGTGTTTTTTCAGGTCAGAAGGTGTTCCTGGG
CAGGAAAATAACAGACGTACTGGAGACCATCACCCACAGAAGCATCCCAT
CATCCTTGCCCATCAAGATATGCTTCGTCTGCACCTCCACATTCATGTCC
AGCGCGGCACTAATCGAGAAGGTCCGCGAGACGGTGGACAGGGTACAGGA
GCAGCCCGCCAAGAAGACTAAGGTAGCGGAAATAGAGGAGCCATCGACAC
AGGAAAGCGATAAGAAGGCGGTTAAGGTGCCAAAAAAGAACACCACCCTC
CGTCAGCGCAGCAAGTCCATAGCAGCTTTCCCGCCAAGCTTTGTGAATGG
AGCTAATACTAATACAGAAATCGAGATCATTAGTGCTTCGCCCAAGAAAC
TCGATAAGACCCCTAAAAAGCAGATATCTCGACTCTTCGAGGATAATCTT
AACGATTCGGTTAAGCTGACGCCCGCCAAAGAGGTGTCGTCTACTAAAAA
GGCTTTCCTTAATCTCTTTGGCAACGGCGGCAACGATGCCATCGAAGTAC
TGACCGAGAGCGAGGAAGAGGAGGACTCGGATAAAGGTCCTATCACCATT
AACACAAATAACTTTCAGTGTCCAGAGTGCGAATTTCACGCAAAGTTTCC
CAAACCGTACAAGGAGCATCTGCAGAAGGAGCACGGTCTTCAAAGACCAC
GCATATACCCCTGTACCTTGTGTATTAAGACTTTTGGAGTGCTTAAGACT
TTGAAAAATCATTTAAGGGACACTCACTCACGCACTTTTGAAAGCGAGGC
TAAGACTAAGCGAAGGAAAGCAAGGAAAAGGAGGCTAAGTCAGGGGCCAA
GAATAAAATTGACGCCAAAGGCAAAGGAGACCAATGCTGTGAGTCAAAGG
AAGAAGCCCAAAGAAAAAAAGTCCAAAGAGAAAAGACGAGATCAAATGTA
TGTTGGAAACCAAGTGTGACGAATTCGACGACAAGTGAACAACAAAAGGC
CACAGATAGGTGAGGACCGCGACCGACCAGCTTACAATCGCCTCTTAGCC
TAATGATCATATGAAGA
UFO11395.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:40:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2199-RC | 2640 | CG2199-RC | 104..1168 | 9..1067 | 4990 | 98.5 | Plus |
| CG2199-RA | 2846 | CG2199-RA | 310..1374 | 9..1067 | 4990 | 98.5 | Plus |
| CG2199-RB | 2576 | CG2199-RB | 40..1104 | 9..1067 | 4990 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:40:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1340952..1341861 | 1047..144 | 4100 | 98.5 | Minus |
| 3L | 28110227 | 3L | 1341928..1342062 | 143..9 | 675 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:40:02 has no hits.
UFO11395.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-23 10:28:45 Download gff for
UFO11395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2199-RA | 308..1384 | 9..1078 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:23:44 Download gff for
UFO11395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2199-RB | 40..1116 | 9..1078 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:35:43 Download gff for
UFO11395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2199-RB | 40..1116 | 9..1078 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:35:43 Download gff for
UFO11395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1340912..1341861 | 144..1085 | 97 | <- | Minus |
| 3L | 1341928..1342062 | 9..143 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:23:44 Download gff for
UFO11395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1340912..1341861 | 144..1085 | 97 | <- | Minus |
| arm_3L | 1341928..1342062 | 9..143 | 100 | | Minus |
