UFO11403.5prime Sequence
1155 bp (1033 high quality bases) assembled on 2012-05-17
> UFO11403.5prime
CAGTCGACATGCCCCCCAGACCTCCGCCAAAGAATATTCGGCGAGTTGAG
CCCCCTACCATTCCCAGCCAGCAGCTATCGTCTTCGCCCAAAAGGGAGAC
ATATATGATCAACACGATGCCAAGCAGTTCAAGCGGCAGTCTCTGCATTG
ACAGCCTGGGCAATTCGCTGGAGCGGAACATCAAGCCGTCTGATATACTA
CGTCAGAAATCATCTGATAATTTGGATTCCAAGTACTCGGCAAAACGGAA
AACCACACCGGAGCTTAGTAAATTTGTGAACGTAAACAATCCTGAATTAA
TGGAGGAGCTCGGTCGTAAGATGGTAAGCAAGGCAGACAGCCTGGAACAA
ACGAGGAGGAACGACTCGTCGCCTTCTGGCTGTGGTAGCCTAGGACGCAC
TTCCTCCACGCCTGGGCGATCGTTGACTCCTGGACGAACCGGAGTTGGTG
CCTCGCCAACTGGTAGTCTAAGTAAAACCGGAAAACTGGCAATGGCGGAC
AGCAGCTCCACTAGCAGTCTAGAGAGGAGATCGTGCCTGCAGGCTGTCGA
TGCGGACATTGGAACGGAATCGCGGGAATCGGGTGCCAACCAGCGTAGTG
TAGGGTCCAAGGAGTCGCTGACATCACAAGGCATATCGGAGGTGATCAAG
AGCTACGAAAGCGTGTCTTCGCTAAGTTCGGAAAGTGCAAAGGCGGTGGC
TTCCCAACAGTCGGCGGCAGCGGGCGGAGCTTTAGCGGAGTGTGAACCGT
ACTATGATAGCGTACCGCTCGACAACGGCGACGGAGAATACGTTTTTATT
AAGCCCGGCCGCACCGGATCCTCATCCAGTCGCGATGATTTGTCGACGCC
TGGGAGCAGCATTTTGCCTTTGCCTAATGTAGCGGATCCCGAATCTCCAG
GCAGGACCTCTACTACGTCAACATCGATTTCTTCCTTCAGCAAGGAATTG
AAGACGCGCTCCAGTTCGCTAGACAGTGACGGGGAGTACGAGGGTCCGCC
CATATACGCACCATTTCGCCACGACGATCAACCACACACAAACTACTCCG
GGAGCATTCCGCAGGTTTGTGGGAAATGCCGCGCGGTGCCTAAATACGTC
AATACTTAGCTCAATAATCAAGTGAAATATCTTACGTGAATGCCTATAAT
GAGTG
UFO11403.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:48:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGAP1A-RC | 4254 | CG40494-RC | 1431..2572 | 9..1145 | 5240 | 98 | Plus |
| RhoGAP1A-RF | 3824 | CG40494-RF | 1001..2142 | 9..1145 | 5240 | 98 | Plus |
| RhoGAP1A-RB | 5012 | CG00000-RB | 1208..2264 | 9..1063 | 5100 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:48:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 133500..134127 | 17..644 | 3140 | 100 | Plus |
| X | 23542271 | X | 134268..134565 | 644..940 | 1440 | 99.7 | Plus |
| X | 23542271 | X | 134634..134758 | 940..1063 | 355 | 94.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:48:03 has no hits.
UFO11403.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-17 09:45:17 Download gff for
UFO11403.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP1A-RC | 1423..2559 | 2..1132 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:27:55 Download gff for
UFO11403.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP1A-RF | 993..2129 | 2..1132 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:39:09 Download gff for
UFO11403.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP1A-RF | 993..2129 | 2..1132 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:39:09 Download gff for
UFO11403.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 133500..134127 | 17..644 | 100 | -> | Plus |
| X | 134269..134564 | 645..939 | 99 | -> | Plus |
| X | 134634..134760 | 940..1064 | 93 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:27:55 Download gff for
UFO11403.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 29887..30514 | 17..644 | 100 | -> | Plus |
| arm_X | 30656..30951 | 645..939 | 99 | -> | Plus |
| arm_X | 31021..31147 | 940..1064 | 93 | -> | Plus |
