UFO11405.5prime Sequence
931 bp (875 high quality bases) assembled on 2012-05-17
> UFO11405.5prime
CAGTCGACATGGCCGAAGCCCATGCCGCCGTGGCATTCTCGTTTGCCATC
ACCCATGAGGGCTTCGACATCAACTATGACCACGAGGTGCTCAATTTGGT
GTGGAACTCAGGAGTTCGTTCCTGGAAAAAGCGATTGGCTCGCGCAAGGA
ACGGCGTACGCAATGGCGTCTATCCGGCTCACATCCAGAGCCTCTGGTTG
ATCTCAGCAATAGCGCTGGGTCTACACTTTGCGGGCTACCAGGCTCCATT
CAATCTGACCAACCGTATACTGGTGCACCTGCCTTCCAACACGATAAACT
GGCAGGTTACCGCCTGCTTTTTGGCCGCTCTGGTGGTCTGGCTATCGATC
TGTTTCACCATGAGATACACTCTCAAGCTGCTGCTCATGTACAAGGGCTG
GATGTACGAGTCCAGAGCTCCCGGTAGTCGTGTCTCTCTGCCCACCATGT
TGTGGGTGGCAGTGGTGCGGGTTCTATCTAGTTGGAACAAACCGGGTCTG
TACAGCTTCCAGGGTTCTCTGCCCAGGCTGCCACTGCCCTCCGTTAAAGA
CACGATGACCAGGTACTTGCGCAGTGTTCGACCGCTGCTTGATGATGAGA
ACTACACGCGCATGGAGCGCCTGGCCAAAGAATTCGAACAGACCATCGGC
AAGAAGCTGCAGTGGTACCTCATCCTCAAGAGCTGGTGGTCCACCAACTA
CGTGTCGGATTGGTGGGAGGAGTACGTCTACCTTCGTGGTCGCAGTCCCC
TCTGCGTGAACAGCAACTTCTACGGCACGGATGCGATCTTCATGAACCTC
ACCGACAAACAGGCGGCGCGTGCGGGCAATGTGATTTCCCTGCTTCTCAA
CTTCCCATGTCGACACGTCATCGTACAGACATCAGTGCTCTCGAGTGACT
ACTATCAATAAATCGTTAGTAATTGTAATCA
UFO11405.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:48:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| whd-RC | 2888 | CG12891-RC | 250..1096 | 9..855 | 4220 | 99.9 | Plus |
| whd-RA | 2882 | CG12891-RA | 250..1096 | 9..855 | 4220 | 99.9 | Plus |
| whd-RD | 2907 | CG12891-RD | 269..1115 | 9..855 | 4220 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:48:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10472507..10473213 | 855..149 | 3520 | 99.9 | Minus |
| 2R | 25286936 | 2R | 10473269..10473409 | 149..9 | 705 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:48:11 has no hits.
UFO11405.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-17 09:45:18 Download gff for
UFO11405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| whd-RA | 246..1103 | 1..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:27:59 Download gff for
UFO11405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| whd-RD | 264..1121 | 1..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:39:13 Download gff for
UFO11405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| whd-RD | 264..1121 | 1..864 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:39:13 Download gff for
UFO11405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10472507..10473212 | 150..855 | 99 | <- | Minus |
| 2R | 10473269..10473414 | 1..149 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:27:59 Download gff for
UFO11405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6360012..6360717 | 150..855 | 99 | <- | Minus |
| arm_2R | 6360774..6360919 | 1..149 | 97 | | Minus |
