UFO11406.5prime Sequence
1136 bp (979 high quality bases) assembled on 2012-05-17
> UFO11406.5prime
CAGTCGACATGAAGGGTTTTAACGACTTCAAGCGAATTGCGGTCGTTTGC
ATACCCAGCGAAGATGAATTGAAACGTCGCATCGCCGAAAAAGAGGAAAA
GGGAAATGCTTTTACAGTTAAAGAATCAACAATTAATAATTTACGAGCCA
ACTTCACACTTCCCTCGCTGGAGTTTGGCTGGTTCGATGATATAAACTAC
ACGGAGCTGACTGGTGACGAGGCCAAGAGCGAGGTCAAGAAGTACAACGA
GAAGGGCAAAAAGGCCATTGACGCGGAGAGGTCGCGTGACAAGAGATCCC
GAGGAAGTCGCGACAACTATCGTCGTGATGACCGGAACCGGAATCGATAC
AATGATGACCGACGTCGTGATTATGGCGGCCAGCGGCACGAAAGTCGTTG
GAGCGACTCCCGCAGGGGAGGCGGCGGTGGCGGTTACTCCAGCAATAGTG
GTGGAGGCGGCAGTCGTGGCTACGACAATCGCCGCAACTACAACAGCGGT
AGCGGTGGCCAGCAAAATTGGGTGCAGAACAGCCGCAGAAGCGGGTACGA
TGATCGCGGCTATGGTGGCGGTGGAAGCGGCAGTCGTGGATACGACAATC
GCAACCGTGGATACGCAGGCGGCAGCGGTGGTGGTGGCGGCGGCGGCGGT
GGTGGTGGTGGTGGTGGTGGTCAGCAAAACTGGATGCAGAACAACCGCAG
AAGTGGGTATGACGACCGCGGCTACGGCAGCTCGCGGGACTATCGCGATC
GAGACCGTGGCAACGACCGCAGTCGAATGGGCAGTAACGACCGGAACCGG
GGCAGCAGCCAGAGTAGCTATCGCTCGGGAGGTGGTACTCATCAACAACG
GGATTTTCGGCCTGGCCACCGCGACACCAAAGAAGATAGTCGCGGTGGCT
AATGAGCGGTCAGCTGGTCAATCGCTACCCAAGTATGGCCATAACACCGC
TGTAGGCGGTGGCTACGATCAGTTAAAGCAACAGGTGGAGCCACCTGCCG
GAGGCAAGTCTTCCTTTAGCGGCAAGTGGAGTTACGTACAGTTCACATCA
TCAGCAACAGCAGCTCCCGCCAGCATCAACAACGGAATCTTGGCCAAACT
CGCAGCAGTCACAACAATACCAAAACTCAGCAGCAC
UFO11406.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:48:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30122-RD | 4620 | CG30122-RD | 2720..3843 | 9..1132 | 5125 | 97.6 | Plus |
| CG30122-RC | 4623 | CG30122-RC | 2720..3843 | 9..1132 | 5125 | 97.6 | Plus |
| CG30122-RB | 4620 | CG30122-RB | 2720..3843 | 9..1132 | 5125 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:48:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18633426..18634287 | 1008..146 | 4115 | 98.7 | Minus |
| 2R | 25286936 | 2R | 18634770..18634908 | 147..9 | 695 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 02:48:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2355..2442 | 1046..1134 | 172 | 70.3 | Plus |
UFO11406.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-17 09:45:19 Download gff for
UFO11406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30122-RD | 2712..3845 | 1..1136 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:28:02 Download gff for
UFO11406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30122-RB | 2714..3847 | 1..1136 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:39:15 Download gff for
UFO11406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30122-RB | 2714..3847 | 1..1136 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:39:15 Download gff for
UFO11406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18633426..18634285 | 148..1008 | 99 | <- | Minus |
| 2R | 18634770..18634914 | 1..147 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:28:02 Download gff for
UFO11406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14520931..14521790 | 148..1008 | 99 | <- | Minus |
| arm_2R | 14522275..14522419 | 1..147 | 97 | | Minus |
