UFO11409.5prime Sequence
1115 bp (995 high quality bases) assembled on 2012-05-17
> UFO11409.5prime
ATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAATCAGACTT
ACATTATACGAAGTTATCAGTCGACATGGAACCAGATCCCAATGGGATAA
AAATAGAGCCCTCACTTGATCAGCAGCAGTACGCCACCCATGTGCTGGCC
ATCAATGGCTCCAATGCCCGCCTGCTCATCGAGCATCCCTCAGCTTTGTT
GGTACCACTCTCCTCGCATCACCAGCTGCAATTGCAACAGCAGCAACAAC
AGCAGCAGCACGTACAGCAGCAACATCAACAACAGCAGCAGCAGCATCAG
CAACAACAGCAACAGTTCCAGCAGCAACATCTTCACCAGCAGCAACAGGA
TCAACTGCAGTTCCAGCAACAGCATCTCCAGCTTTATGCACCACTGAAGC
AACAGCAATTGCAGCAGCAGCAATCGCAGCAGCCACCCACTCCATTGGGA
CCCACCAGCAGTGCCAGTTCCGCATCCATAACAGGTGCCTCCACCACTGG
CCACCAGCAGAGGTGGAACGAGAGCCCCGAGGCACGCCAGCGCCGTCTGG
CCAGAAATGCTGAAAGGATGCGGGAACGCCGGCAGCGCGAGAGCGAGGAG
GAGTATCGCAAGCGACTACTCCGGAATGCAGAAGCCAATCGCCAGAGACG
CCAGAATGAATCCGACATAGAGCGGGCCATGCGGCTAGTGAGGAATGCGG
CCAGGCAACGGCTACGCCGGGCCATGGAGTCGCCGGACCAGAGGGCCAAA
CGGCTGGCCAAATTGGCCGAAAGGATGCGCATGTATCGCGCCAGCGAGAC
GAACGATCAGCGAAAGCTCCGGCTGGCAGAAATGGCGGCAAGGGCGCGCC
AAAGGATCGCCAATGAGTCACCGGAGGAGCGGAAGGAAAGACTGAGAAAG
CTGAACGATTATGCCAAAAAGGCGACCACCACAGCGACGACGACGACACG
GACGAGGCAGGCACCCCGCAGCCCGCGGAGGATCAGCAGCATCTGGTGAC
AGCAGCCGCTATCAGCAACACCAAGGCCCTGGCAGGATGGAAGTTATATG
GGGACAGGCATGTTTTCTGGCGCCCGGCTCCCTGCGTTCCACCCATGCCA
ACTGAAGCAGGGAGC
UFO11409.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:48:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14442-RB | 4388 | CG14442-RB | 1046..2078 | 76..1111 | 4895 | 98.8 | Plus |
| CG14442-RE | 4412 | CG14442-RE | 1052..2102 | 76..1111 | 4705 | 97.1 | Plus |
| CG14442-RD | 2983 | CG14442-RD | 1052..1898 | 76..922 | 4235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:48:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6693110..6693956 | 922..76 | 4235 | 100 | Minus |
| X | 23542271 | X | 6692678..6692866 | 1111..920 | 485 | 91.8 | Minus |
| 3L | 28110227 | 3L | 14027696..14027803 | 347..240 | 210 | 79.6 | Minus |
Blast to na_te.dros performed 2014-11-28 02:48:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6742..7194 | 216..667 | 454 | 60 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6887 | 269..436 | 363 | 68.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2434..2679 | 218..457 | 344 | 62.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6898 | 293..484 | 336 | 69.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2260..2534 | 239..510 | 286 | 60.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6938 | 310..541 | 273 | 63.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2525 | 319..530 | 268 | 62.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2619..2835 | 220..436 | 247 | 62.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1181 | 284..410 | 238 | 67.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1055..1147 | 331..423 | 195 | 67.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2449 | 342..483 | 192 | 62.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1589 | 298..369 | 189 | 73.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6877 | 358..510 | 178 | 61.6 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3192..3342 | 239..406 | 144 | 60.4 | Plus |
UFO11409.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-17 09:45:21 Download gff for
UFO11409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14442-RB | 1041..2081 | 68..1115 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:28:06 Download gff for
UFO11409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14442-RB | 1041..2081 | 68..1115 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:39:18 Download gff for
UFO11409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14442-RB | 1041..2081 | 68..1115 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:39:18 Download gff for
UFO11409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6692675..6692864 | 922..1115 | 92 | <- | Minus |
| X | 6693111..6693957 | 76..921 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:28:06 Download gff for
UFO11409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6586708..6586897 | 922..1115 | 92 | <- | Minus |
| arm_X | 6587144..6587990 | 76..921 | 99 | <- | Minus |
