UFO11411.5prime Sequence
1130 bp (1015 high quality bases) assembled on 2012-05-17
> UFO11411.5prime
CAGTCGACATGCGCAAGTATCGCAACAAGCTGCAGCGCTCCGGAATCGAG
GACTGCGCCTTAGTGGGTCACCATCCCGGCAGCATTCAGCACCATCATCC
CGGCGTGGTCGTCGATAGCGATAGCGAGTTCGAGATGAAGGACAAGAGTT
CGTCACGGGCCAAGTTTAGCCGGACGATCTCGCTGCAGCAGCGAAATTTC
AAGCAAAAGATCGTGGCACTTTTGAAGCGGTTCAAGGTGAGCGAGGAGCT
GGAGGGAGAGTCCGGTCATCGAGGCACGGCGGCGCTGCGCGGAGAACGCG
ACCTGGATGCGCTCTTCCAGGAGCTGGAGTCGCTGTCCTGTTGCGAGGGC
GACGACTCCGGACCGGACATGGACAGCATATCGGTGGGCTCCACGCCGAA
GCCATCGCTGCGTCCCTTCTTCACCAACTCGCGGATTATGTTGCACGACA
ACATCACCGGAAACGGCGGAGATCTGAGCCAATTGGTGGGCGGTGGCCTT
GGACCCGGAACCGGAACAGCTGGCAACTCTGAGCGCCGATCATCGGATAA
GAGCGACCAATTGACCAATTCATCTTACAATCTTGAAAATAACAAAAACC
AAAAATGCATTCATTTAACAAACAATAACAATTCGGCAACAACACCAGAT
CGCGGGGGTAATGACAGTTCCGGCAATGAGGGCAACGCTGGCTATACGGA
TGGCCAGAACTCTGATCCGCAAAATAGTCCGCCCAGGGACAAGGACTACC
TGCGCCTGCAGCAGATGCAGCAGCAGCAGTTGACCCCAGTGAGCTCTGTG
GCTGCCAGCATGGGTAGCGGGAGCGTGATAACGCCCGCTCAGACGGAGAA
GCGGTCACGATTGTTCCGAACTTCCAGCAATACTCCGGCAAATGCAGGAA
GCGGTGGCAACAGTGTCAGTGCCATTAGCGCATCGGGAGGCGGCAAGAGG
AAGCACAACCCTGAGCCTGAGTGCCGAGCCGAGATCCGTGCTAGAGCTTG
CTGTCGCCCACCAATGTGAGCCACGCAAGCTGCTGCTCGACAGCTGAGTC
GCGGTGTTCGCGGCGAGACGCGTAATTCGGAGGGGTGACATCATAGCCGG
CGAAGGCGTGGGTGCATGCCTGCTGGCCAA
UFO11411.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:47:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| KrT95D-RD | 3121 | CG5405-RD | 395..1530 | 9..1130 | 5150 | 97.9 | Plus |
| KrT95D-RA | 5687 | CG5405-RA | 2059..3194 | 9..1130 | 5150 | 97.9 | Plus |
| KrT95D-RB | 4105 | CG5405-RB | 1379..2514 | 9..1130 | 5150 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:47:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24000373..24000783 | 1053..646 | 1810 | 98.8 | Minus |
| 3R | 32079331 | 3R | 24003415..24003765 | 523..173 | 1740 | 99.7 | Minus |
| 3R | 32079331 | 3R | 24005688..24005852 | 173..9 | 825 | 100 | Minus |
| 3R | 32079331 | 3R | 24002422..24002548 | 648..522 | 635 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:47:54 has no hits.
UFO11411.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-17 09:45:16 Download gff for
UFO11411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| KrT95D-RD | 389..1463 | 1..1072 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:27:49 Download gff for
UFO11411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| KrT95D-RB | 1373..2447 | 1..1072 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:39:04 Download gff for
UFO11411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| KrT95D-RB | 1373..2447 | 1..1072 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:39:04 Download gff for
UFO11411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24000352..24000780 | 649..1072 | 97 | <- | Minus |
| 3R | 24002422..24002547 | 523..648 | 100 | <- | Minus |
| 3R | 24003416..24003764 | 174..522 | 99 | <- | Minus |
| 3R | 24005688..24005858 | 1..173 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:27:49 Download gff for
UFO11411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19826074..19826502 | 649..1072 | 97 | <- | Minus |
| arm_3R | 19828144..19828269 | 523..648 | 100 | <- | Minus |
| arm_3R | 19829138..19829486 | 174..522 | 99 | <- | Minus |
| arm_3R | 19831410..19831580 | 1..173 | 98 | | Minus |
