UFO11412.5prime Sequence
1132 bp (1014 high quality bases) assembled on 2012-05-17
> UFO11412.5prime
CAGTCGACATGGGCTCGTGCTCGTGTACGCGGCGACACTTTTTGCTGTCA
ATATGCTTCCTGCAAGTGATAACGATTATCGAGCGCCAGGTATTCGACTT
CCTCGGCTACATGTGGGCGCCTATCCTAGTGAACTTTTTCCACATTTTGT
TCATCATATTCGGGTTTTACGGCGCCTACCACTTTCGCGTTAAATACATC
ATCACCTATCTAATATGGAACTTCCTGTGGATCGGGTGGAATACCTTCCT
CATTTGCTTCTACTTAAATGTGGGGCAGTTGAACAGGGACAGTGACCTGC
TCAACCTGGGCACTGGCAGCGTCTCCTGGTTCGAGGCGAATGGGTACGGT
TGCAAGCCCACCTATAACATGGCCGCGGACGATACGTTCCGTCCCCAGCG
GCCGGAGCGCGTGGAAGGCTGCCTGCTGGACTACCCGCTGGTGGAGATCA
CCCACTCGGGGGTACAGTGCGCTCTGGCGCTGCTCGGCATACTCGGTGCG
ATTCTGATTAGTTGCATATTTCTTGACGAGGACGACAGATTCGATTTCAT
GAACGGCGACGCGAAGAGTCCACAGCATACCGTGGTGCACCCAATGTACG
TGAGCTATACAAGTATACCCACAACATCCGCAAGCGCCACCATGCAATCA
AATAAGCATCTGCAACTGCAGCACCAGCAGCCGCAGCAGAACTCACTGAA
ACTCTATCATCATCAGCAACAACAGCAACCCAAACTACACCACTTCAATA
AGAACTACCAGTTGAGCGGCAGCAACAATAATACACTGAATAATAATCTC
CACCAGCGTGCGCCTGCGCTGCTGCCGCCAAACACAACAAATAACCGCAG
CGCATCATTCCAAACTCAAAGTCACCCTTTCAAACACCATGTAACTCAAC
GCACAGGCGGAGAGGGGGAGCACTGCAGTAGTCTACGCCGTCATCGACAA
CACATTCAGGCACTCGTCAGCCCAGTCCATGTCACTCAGACACGCCGTCG
CTTTCGTACGCTTCCCTGCAAACTCGAGTCCCTACTAGCGGAACTCCTTA
GCAACAGCAACTACGCAATCGAGCCCGACTCGTTCAGGCAGTCTCATTGC
GGTATTCTATCCAAGGCCCAGCCGCCAAATCG
UFO11412.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:48:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NKAIN-RH | 3394 | CG34413-RH | 443..1510 | 9..1064 | 4945 | 98.4 | Plus |
| NKAIN-RG | 3659 | CG34413-RG | 708..1775 | 9..1064 | 4945 | 98.4 | Plus |
| NKAIN-RF | 3338 | CG34413-RF | 387..1454 | 9..1064 | 4945 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:47:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24884526..24885028 | 541..1035 | 2015 | 96.6 | Plus |
| 2R | 25286936 | 2R | 24883420..24883612 | 287..479 | 965 | 100 | Plus |
| 2R | 25286936 | 2R | 24883076..24883214 | 68..206 | 695 | 100 | Plus |
| 2R | 25286936 | 2R | 24883278..24883359 | 207..288 | 410 | 100 | Plus |
| 2R | 25286936 | 2R | 24883673..24883734 | 479..540 | 310 | 100 | Plus |
| 2R | 25286936 | 2R | 24882960..24883019 | 9..68 | 300 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 02:47:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2548 | 622..865 | 268 | 61 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6745..6906 | 615..785 | 229 | 64.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2393..2554 | 609..765 | 228 | 65.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6918 | 639..857 | 201 | 61.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6783..6901 | 603..728 | 197 | 68.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1180 | 655..779 | 186 | 64.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2323..2452 | 655..783 | 182 | 64.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6818..6923 | 622..726 | 174 | 68.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1052..1216 | 623..792 | 171 | 58.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6709..6831 | 653..780 | 169 | 61.7 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3252..3379 | 632..757 | 166 | 60.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2370..2510 | 622..761 | 163 | 59.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2574..2688 | 642..765 | 140 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2719..2873 | 615..778 | 134 | 59.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1513..1578 | 664..729 | 123 | 65.2 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 497..573 | 644..723 | 123 | 63.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2467..2539 | 617..685 | 113 | 64.4 | Plus |
UFO11412.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-17 09:45:17 Download gff for
UFO11412.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NKAIN-RG | 723..1805 | 3..1073 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:27:52 Download gff for
UFO11412.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NKAIN-RF | 384..1466 | 3..1073 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:39:07 Download gff for
UFO11412.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NKAIN-RF | 384..1466 | 3..1073 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:39:07 Download gff for
UFO11412.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24882957..24883019 | 3..68 | 95 | -> | Plus |
| 2R | 24883077..24883214 | 69..206 | 100 | -> | Plus |
| 2R | 24883278..24883358 | 207..287 | 100 | -> | Plus |
| 2R | 24883421..24883612 | 288..479 | 100 | -> | Plus |
| 2R | 24883674..24883734 | 480..540 | 100 | -> | Plus |
| 2R | 24884526..24885084 | 541..1081 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:27:52 Download gff for
UFO11412.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20770480..20770542 | 3..68 | 95 | -> | Plus |
| arm_2R | 20770600..20770737 | 69..206 | 100 | -> | Plus |
| arm_2R | 20770801..20770881 | 207..287 | 100 | -> | Plus |
| arm_2R | 20770944..20771135 | 288..479 | 100 | -> | Plus |
| arm_2R | 20771197..20771257 | 480..540 | 100 | -> | Plus |
| arm_2R | 20772049..20772607 | 541..1081 | 95 | -> | Plus |
