UFO11414.5prime Sequence
1107 bp (1021 high quality bases) assembled on 2012-05-17
> UFO11414.5prime
CAGTCGACATGATTGTGTGGGGTGAGCCCCAGCGAGATGTAACTTATCCG
GTGCACGCCACTTCGCAAGCGACGGCACTATGCTGGCATCCGGAGAAGGC
GCTCCTGGCCAGCGGTTGGGAGCACGGCGACATCCATGTGTGGTTCGCTG
GTCACAGGGAGTTTGCCAGCGTGAACGCACCGCACAAGGCGGCCATCGTC
CTGCTGCAGTTCAGCGAGCAGGGCGGGCGGATGGTCACGGCGGATGCCAT
GGGCTTGGTCACCGGATGGCGCTGCGATGGCCAGTACCAGTTCCTAACCA
TGTTCTCCCACGACCTGCGGGAGGTGTTGCTGCTGATCTGCTTCCGCCTT
ACGGTGGAGAGTGAGGTGCGCGAGGAGATGGCCAATCTAGCCAAGGCTGC
TGTGGCAGGCGATGAGAACGCCCTGGACACCCTAACCAATTGGAGACCGC
GCACAGCAGCCCGGAGCATGACCCATTCGGGGGTGCGGGACAACCACTGC
TTCTACGCTTGCACCCAAGGAGGAGTGGTGTACTACATCAACCAAGGAGG
CGCCTGTGTCGAGGTGATGAAGTGCGGATCACTGCCTCCCATTGTCCAGA
TGTTGTGGCACCCAAGAAAGGACGCCGTCATTTGCCTGATGGAGGACTTG
ACAGTCACCTTGTTTTTGGTTGAATCCACAGGCATCCTTACGGAGCTGGA
TCGTGTTAAAATGAGCGGACGTGGAGGCGGTCGGCAGGGAGGCATCGCGT
GGTCTGGAAACTCTTTAGCCATCATAACAGGCGATTTTTTCGTCCGCATT
TGGGACATCGAGAGAAGCGACAATTACCTATTGAAAATGGACCTACCCAG
TGGCAACCAGCCAGGCTCATCTATGACCACTTTAAGTAATGGCACCATGT
CCTCGTCCAACCAATCTTTAGCCATGACAGCAGCGAAAGCAGCGCGTCTC
GCAGACACCAAAGTACGGCCAGCTGAACGGCGAATGTCACCTGCTGGCAT
ATAGCCTCTACGGGACAGACTCTGGTGTGCAGACGTTCCAAGGAATGTCT
ATACCTGGAGGGACGGCAGACAAGCCTAGTCGGCCCGGAAAATTGCTGCA
CTGACAA
UFO11414.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:48:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rempA-RC | 5308 | CG11838-RC | 737..1796 | 9..1059 | 4950 | 98.5 | Plus |
| rempA-RB | 5024 | CG11838-RB | 465..1512 | 21..1059 | 4890 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:48:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 557942..558542 | 620..20 | 3005 | 100 | Minus |
| 2L | 23513712 | 2L | 557415..557668 | 1024..778 | 860 | 93.7 | Minus |
| 2L | 23513712 | 2L | 557721..557882 | 781..620 | 810 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 02:48:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 8556..8614 | 896..955 | 126 | 70 | Plus |
UFO11414.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-17 09:45:23 Download gff for
UFO11414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rempA-RC | 729..1811 | 1..1072 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:28:15 Download gff for
UFO11414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rempA-RC | 729..1811 | 1..1072 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:39:26 Download gff for
UFO11414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rempA-RC | 729..1811 | 1..1072 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:39:26 Download gff for
UFO11414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 557363..557665 | 781..1072 | 93 | <- | Minus |
| 2L | 557722..557882 | 620..780 | 100 | <- | Minus |
| 2L | 557943..558546 | 16..619 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:28:15 Download gff for
UFO11414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 557363..557665 | 781..1072 | 93 | <- | Minus |
| arm_2L | 557722..557882 | 620..780 | 100 | <- | Minus |
| arm_2L | 557943..558546 | 16..619 | 99 | | Minus |
