UFO11416.5prime Sequence
1126 bp (951 high quality bases) assembled on 2012-05-17
> UFO11416.5prime
CAGTCGACATGAGTCGACATGAAGGTGTCAGCTGCGATTCATGTCTCAAG
AGCAACTTCAACGGACGGCGCTACAAGTGCTTGATCTGCTATGACTACGA
TCTGTGTGCCGATTGCTACGAGGATGGCGTCACCTCCACGCGCCATTTGG
TCGAGCATCCCATGCAGTGCATCCTCACCCGCTCCGATATCGAGCTGTAC
TTTGGCGGCGAGATGCTAGCCTCCGACCAGCCGCAGAGCTTCACCTGTCC
CTACTGCAAGAAGATGGGCTTCAGCGACGCCACCCTGCTGGAGCATGTCT
CCGCCGAGCACACGGAGACCAGTCTAGAGGTGGTCTGCCCCGTATGTGCC
GGTCTGCCGGGCGGCGAGCCGAATCTAGTCACAGATGACTTTGCCGGTCA
CCTCACCCTGGAGCATCGCCAGGGACCGCGCGAGCTGATTTCCTTTCTGG
ATGAACCCTCGGCCATCCGTCATGGCGGTGGAGTGCGTCGCATCCCAGGA
CGCACCCTCGGTGGACCACGGACGCGTCGGTCCAACATGCACTTCAGTTC
GTCTAGCGGTCTATCAGCCTTGTCGCCTTCGGGACGGGAATCGGTGGATC
CCATTGCGGAACTGTTATCGCAGCTTTCCGGCGTGCGGAGGGGCGGACCG
CCCACATCTCAGCTGCAGCAGCTACAGATGCAGATGCAGTTGGATCGCCA
GCAGGTGACGGCATCGCGCCAAATCGATCGGCTGCCAAGGCGTGCGCATC
CCATAGTCTCAACATCGAACTCGAATGCCGCCATGGCCGAGGTGATCAAG
CGGGCGGAAGCGGGCGGCAGTGGAGGCAGTGGCGCATTTGGAAGCGGCAG
TGGAGGCGGCAGCGGGGCAACTGCTCCGCCCAACCTGCGCACCACTGAGT
GGCCGGGTGACAGCCAGCTTCTCGACATCGGCCAGCTATCATTCGCAAAC
TCAGTCGAGTTCTGGCCGCAACAGCTCAATGCCAAAAAGCGATCGGAACG
AGCAGCAATGCAGCAACAATGTTCCTGGGCATCAACGTGGGCGTCGGCGA
ACGGCCACCGCAACGGGTGGAACCAGTTCATCGGTGTGACACCTGGAGCG
GGAAGAACTGGAAAGAAGAAGGCAGG
UFO11416.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:48:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11984-RI | 2545 | CG11984-RI | 355..1458 | 9..1112 | 4980 | 97.4 | Plus |
| CG11984-RH | 2445 | CG11984-RH | 255..1358 | 9..1112 | 4980 | 97.4 | Plus |
| CG11984-RG | 2488 | CG11984-RG | 298..1401 | 9..1112 | 4980 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:48:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9012837..9013263 | 449..23 | 2135 | 100 | Minus |
| 3R | 32079331 | 3R | 9012044..9012305 | 711..450 | 1310 | 100 | Minus |
| 3R | 32079331 | 3R | 9011704..9011950 | 960..710 | 1035 | 96 | Minus |
| 3R | 32079331 | 3R | 9011479..9011604 | 1112..989 | 200 | 81 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:48:44 has no hits.
UFO11416.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-17 09:45:24 Download gff for
UFO11416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11984-RF | 227..1288 | 9..1071 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:28:19 Download gff for
UFO11416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11984-RG | 298..1359 | 9..1071 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:39:30 Download gff for
UFO11416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11984-RG | 298..1359 | 9..1071 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:39:30 Download gff for
UFO11416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9012045..9012305 | 450..710 | 100 | -> | Minus |
| 3R | 9011674..9011949 | 711..988 | 96 | <- | Minus |
| 3R | 9011544..9011604 | 989..1049 | 91 | <- | Minus |
| 3R | 9012837..9013261 | 25..449 | 100 | <- | Minus |
| 3R | 9013316..9013331 | 9..24 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:28:19 Download gff for
UFO11416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4837396..4837671 | 711..988 | 96 | <- | Minus |
| arm_3R | 4837266..4837326 | 989..1049 | 91 | <- | Minus |
| arm_3R | 4837767..4838027 | 450..710 | 100 | -> | Minus |
| arm_3R | 4838559..4838983 | 25..449 | 100 | <- | Minus |
| arm_3R | 4839038..4839053 | 9..24 | 100 | | Minus |
