UFO11417.5prime Sequence
1141 bp (1055 high quality bases) assembled on 2012-05-17
> UFO11417.5prime
CAGTCGACATGTTCGCGGGAATAAGGAAACGCCTGGCACGCAAGCAAAAC
GAGAAGGACTGCGATGAGGACGACAAGGAGGATGTGCTCGATAGTATGCC
ACCACCTCCGAATTACATACAGATCTCGCAGGGCAGGATTCAGTTGGTCC
ACCAGCCGAGAACGCCCGTTGAATCGGAGGCGGGAACTCTGTCCCTGGAG
CGGCACGGGGGCTCGATCTCCGGATCCGGCGGCTGTGATAAGAGCCAATG
CGGGTCGCCTACGTTCGAGAAGGAATTGCGCGAACAAATTGAGAACATGA
ATCGCATTATGAAATCCAAAGAACGCAAGCAAATGCAGACATGTCGGGAT
CACAAGGCACTGCAGACGCGCTTTGCCCGACAGGAGAGCCTGCTCCAATC
GATGCAGCAGGAGAATCGATCCTTGCTCACACGAATCCGTCAGTATGAGC
ACTGCCTGGATGATGTGATGCGCAAGGTGGTGGACGCCATTGTGGCAGAA
GATAATCTCCGTGAGGAGGTGAGCATGCTGAAGGGCCGGGTTCGAGATCT
GGAGGCGCAAAATGCTGCTCTGTCCGCCAGTCCGGTGAAGGGCAGGGATG
AAGGCTACTGCACCATGAGCAGTGGGCAGCCGCAGCCGTCGAATGGGCAT
CTGGAAGATCTGCCCGAGGAACCGGAACAGTGGCTCTTGCCTGCCGAACC
CTGCTCCACAGAAATGGAGGACTGGAGCATGTCGCACGAGGAACTGGCAG
TGATGACGTTCGACGACGAGCGGGATCCACATCACCCTCATCTCCAGCAG
CAGCGGAGGAAGAGGGATCACGACTGGCTGTGGCCATCGAGCGACTTTAT
TAACTCCACCACCGTGGAAACGGATTCAGTGGCCGATGGCATTACCCAGC
TGCTGCAGCAGAGATTGTCTACTCCGAGGACGAGGAGGTGGCCTGCACGG
ACTTTACCACGACTTCTACAAACTGGTTACATCCGTTCGATTCGTCGCGC
AGTCTTTACTCATATTTAGAGGGTGAGACGATGACGAGATGAGACGACGA
CGATGGGAGATTCAGTATCTCGAAGCAGGTGGTCCCGCTGGCAGATCAGT
CCACGCCAGTTGAGCGGTAGTCCAGTTGAACCGCTGCTCTC
UFO11417.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:48:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42663-RC | 3999 | CG42663-RC | 1133..2247 | 9..1107 | 5145 | 98.4 | Plus |
| CG42663-RD | 4065 | CG42663-RD | 1436..2316 | 243..1107 | 3975 | 98 | Plus |
| CG42663-RB | 4068 | CG42663-RB | 1436..2316 | 243..1107 | 3975 | 98 | Plus |
| CG42663-RD | 4065 | CG42663-RD | 1133..1366 | 9..242 | 1170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:48:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12748908..12749459 | 361..912 | 2745 | 99.8 | Plus |
| 2R | 25286936 | 2R | 12734917..12735119 | 40..242 | 1000 | 99.5 | Plus |
| 2R | 25286936 | 2R | 12749521..12749642 | 912..1030 | 445 | 96.7 | Plus |
| 2R | 25286936 | 2R | 12747678..12747747 | 296..365 | 350 | 100 | Plus |
| 2R | 25286936 | 2R | 12746607..12746661 | 241..295 | 275 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 02:48:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsil\Loa | 7779 | Dsil\Loa DSV28T24 7779bp AKA(S39346) Derived from X60177 (Rel. 37, Last updated, Version 8). | 3926..3967 | 736..778 | 113 | 76.7 | Plus |
UFO11417.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-17 09:45:25 Download gff for
UFO11417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42663-RC | 1123..2256 | 1..1117 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:28:22 Download gff for
UFO11417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42663-RC | 1125..2258 | 1..1117 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:39:31 Download gff for
UFO11417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42663-RC | 1125..2258 | 1..1117 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:39:31 Download gff for
UFO11417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12734921..12735119 | 44..242 | 100 | -> | Plus |
| 2R | 12746609..12746661 | 243..295 | 100 | -> | Plus |
| 2R | 12747678..12747747 | 296..365 | 100 | -> | Plus |
| 2R | 12748913..12749461 | 366..913 | 99 | -> | Plus |
| 2R | 12749523..12749742 | 914..1117 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:28:22 Download gff for
UFO11417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8622426..8622624 | 44..242 | 100 | -> | Plus |
| arm_2R | 8634114..8634166 | 243..295 | 100 | -> | Plus |
| arm_2R | 8635183..8635252 | 296..365 | 100 | -> | Plus |
| arm_2R | 8636418..8636966 | 366..913 | 99 | -> | Plus |
| arm_2R | 8637028..8637247 | 914..1117 | 91 | | Plus |
