UFO11418.5prime Sequence
1160 bp (1043 high quality bases) assembled on 2012-05-17
> UFO11418.5prime
CAGTCGACATGGTCTACATCATACCGTTCTTTAGCCACAATGACCCGCCC
GACATGATCATCACCAAAGAAAAAAGCATGGCTTGCCTGCAGGATGAGTT
CGGTCACCTAGGCATCGCCGCTACAGACCTGCCGTTCAAATCCTCCGACC
TGGACTCTCCGCCCCGCCTGCAGCATCACAACAACTATGCGGAGATCACG
GACAGCAGTGCGGAAAACACGTGCCAACAGCGCTGGCCACCTCATGTGGG
AGGAGCAGGGGCGGCCTTCGGGCATCCGGACAAGCCCATTGGCTGGATGT
ACGGACTGCTCGGATGCATGAAGCCCGTGCTTTCGTTCATCGGGAAGACG
GGGGTGATCGAGGTGAAGAGTCAGCGGAGCGAGGACTGGCAGATTCCATT
TGAGTCCATCACCGAGTTGGAATGGCTGGGAAGCGGAGCACAAGGAGCCG
TCTTCAGTGGCAGGCTAAAGAACGAGACTGTGGCGGTCAAGAAGGTGAAG
GAGCTGAAGGAAACGGACATCAAGCATCTCAGGAAGCTCGATCATGAGAA
CATTATTAAGTTCAAAGGGGTTTGCACGCAGTCACCGGTGTTCTGCATCA
TCATGGAGTTCTGTCCGTATGGCCCACTGCAGAATATCCTGAAGGAGGAG
CAAGTCATGTTACCGTCCCGCTTGGTCTCTTGGTCCAAGCAAATTGCCCT
GGGCATGCAGTATCTGCATTCCCACAAGATCATACACCGAGATCTAAAGA
GTCCAAACATACTGATTAGTACAAATGAGGTGGTGAAGATCAGCGACTTT
GGCACCAGTCGCGAGTGGAACGAGATCAGCACCAAGATGAGCTTTGCTGG
TACCGTAGCCTGTATGGCTCCGGAAGTGATCAGGATGAGCCGTGCTCCGA
GAAGGTGGACATTTGGTCGTACGGTGTGGTGCTATGGGAAATGCTCACTG
CGAGATACCTTACAGGATGTGGACTCATCAGCCATAATCTGGGGTGTGGC
AACACTCTCTCAAGCTGCTGGTCCCGAGCACTGTCGGAGGGATTTAGTTG
CTGGTTAGCTCTGTTGAAAGTAAGCCGAATCGGGCCATCGTCGGCCGATT
CTCTCGCACTTGGAATCCGGACGGACTGCTGGAAACGAAGCAATTTTGGG
GAAGCCAAGT
UFO11418.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:48:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wnd-RD | 3645 | CG8789-RD | 662..1783 | 8..1114 | 5175 | 98.2 | Plus |
| wnd-RC | 4512 | CG8789-RC | 584..1638 | 75..1114 | 4840 | 98.1 | Plus |
| wnd-RB | 4307 | CG8789-RB | 379..1433 | 75..1114 | 4840 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:48:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19629265..19629755 | 565..75 | 2455 | 100 | Minus |
| 3L | 28110227 | 3L | 19627819..19628097 | 1031..758 | 1130 | 97.8 | Minus |
| 3L | 28110227 | 3L | 19628152..19628343 | 757..566 | 960 | 100 | Minus |
| 3L | 28110227 | 3L | 19632367..19632435 | 76..8 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:48:51 has no hits.
UFO11418.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-17 09:45:26 Download gff for
UFO11418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wnd-RD | 662..1805 | 8..1131 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:28:24 Download gff for
UFO11418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wnd-RD | 662..1805 | 8..1131 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:39:33 Download gff for
UFO11418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wnd-RD | 662..1805 | 8..1131 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:39:33 Download gff for
UFO11418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19627704..19628097 | 758..1131 | 93 | <- | Minus |
| 3L | 19628152..19628343 | 566..757 | 100 | <- | Minus |
| 3L | 19629265..19629753 | 77..565 | 100 | <- | Minus |
| 3L | 19632367..19632435 | 8..76 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:28:24 Download gff for
UFO11418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19620804..19621197 | 758..1131 | 93 | <- | Minus |
| arm_3L | 19621252..19621443 | 566..757 | 100 | <- | Minus |
| arm_3L | 19622365..19622853 | 77..565 | 100 | <- | Minus |
| arm_3L | 19625467..19625535 | 8..76 | 100 | | Minus |
