UFO11420.5prime Sequence
1121 bp (1006 high quality bases) assembled on 2012-05-17
> UFO11420.5prime
CAGTCGACATGAGCTCCGTAAATAAAATAAAGCTTAACGAAAACAACAAG
ATGCACTCTTTTGGGAACTGGGAGCGGTGCCGGAATCTGGGAGAGGGCGG
ATTCGGCCTAGTGATCCATTGGCGAAACCGAACAACGGGCCGTGAAATTG
CCACCAAGCACATAAAGGAGATGGGGGCCCTGAGTGCCGATCAGCAAGTC
AAGCTCAGCGAGCGTTGGAACAAGGAGCTGAACTGGTCTCGTCAGTTTAA
AAACTTTCCCCATATTGTGGCTGGCGTGGACATCGAGGATCCGGACTTTT
TGGAGTACCTGAATGGCATGTTTAGTGCCAAGTTGCCTGTTATTGTGCTG
GAATACTGTAACGGTGGAGACGTGAGGAAGCGTCTGCAGAGCCCGGAGAA
TGCTAATGGTCTGACGGAGTTCGAGGTGCGGCAGATACTGGGAGCCCTAC
GTAAGGCCCTACATTTTCTGCACTCGCAGTGTGGGATTTGCCACCGCGAT
TTGAAGCCGGACAATATAGTAATCCAACGTGGAGTTGATGGCAAAAAAAT
CTATAAGCTAACCGATTTTGGACTCGCCCGAGGAACTCCCGACCAGACCA
TGGTGCAGAGCGTGGTGGGCACCCGACATTACTATGCCCCAGAAGTGGTG
GAAAATGGTTTTTACAACTCGACCGTGGATTTATGGTCCTTCGGAGTAAT
TGCCTATGAGCTGGTCACTGGTGAGCTGCCCTTCATCCCCCATCAAACCC
TTAAAAACATTATACTCAATCTGATAAAAAAGCCCGCCAAATGCATTGCT
ATCACAGAGGATCCGGAGGATAACACTCGTTTCGTGAATCAGTTTGAACT
GCCACAGACGCACCATCTGTCGCGGCCCTTGGCTGCTCAGTTCACAAATG
GCTGGCAAGCCCGTAAACTCAAACTACAAGGAACGCGGTCAACTAGCAGC
TAATACGTTCCAGTCGTCTCGCTGACCTGAACAAATACTCAATATGATGT
GCTAACTATTTTTGCTGTACAACTGCACGACTTGAGTATGCGGTCCTCTG
CGGAAATGACTATGAGATTAATGCATGAATTGTCCTGAACTTGCATGACA
AGACTACTTCTCTCCAATCAT
UFO11420.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:48:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ird5-RB | 2488 | CG4201-RB | 60..1125 | 9..1065 | 5035 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:48:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16047888..16048812 | 1065..150 | 4105 | 98.5 | Minus |
| 3R | 32079331 | 3R | 16049221..16049362 | 150..9 | 710 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:48:55 has no hits.
UFO11420.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-17 09:45:26 Download gff for
UFO11420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ird5-RB | 59..1136 | 6..1072 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:28:27 Download gff for
UFO11420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ird5-RB | 58..1135 | 6..1072 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:39:35 Download gff for
UFO11420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ird5-RB | 58..1135 | 6..1072 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:39:35 Download gff for
UFO11420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16049221..16049364 | 6..150 | 99 | | Minus |
| 3R | 16047894..16048811 | 151..1059 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:28:27 Download gff for
UFO11420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11873616..11874533 | 151..1059 | 98 | <- | Minus |
| arm_3R | 11874943..11875086 | 6..150 | 99 | | Minus |
