UFO11427.5prime Sequence
1151 bp (1034 high quality bases) assembled on 2012-05-17
> UFO11427.5prime
CAGTCGACATGGCATTCCGCTATCTCATCTCTCTGTGCGCCCTGGTGGCC
TGCGCCAATGCTGGTCTCTTGGCCAGCCATGTGGCCATTGCTAATCCGTC
GGTGGATGCCGTCGCCTCCACTCAGCAGAATGTGGTGAGGTCCTTTGCCG
GTACTGTTTCCAGCTACTCGAAGGCGGTGGACACCCCCTACTCCAGTGTG
AGGAAGAGCGACACGAGGATCCAGAACAATGTATACACTCCTGCTATTAA
GACGACCACTTATGGTGCTGCTCCTCTGTACACTCAGGCTACTCCCATTG
TGTCCAAGACTCTGGTCCATGCTCCAGCTCCCGTTGTTGAGAAGACTGTG
TACGCTGCTGCTCCAGCTCCAGTTCTGGCCAAGACTGTTTACTCCGCTCC
TGCTCCAGTTGTGGCCAAGCACGTTTATTCCGCTCCAGCTCAGGTTTATG
CTCCTGCCGCCCCAGTTGTGGCCAAGACCGTGTACTCTGCTCCTGCTCCA
GTTTACGCTGCTCCTGCTCCAGTTTATGCTGCACCCGCTCCAGTTGTAGC
CAAGACCGTGTACTCCGCACCAGCTCCAGTTCTGGCCAAGACCGTGTACT
CTGCTCCAGCTCCAGTTTATGCTGCTTCCGCACCGGCTGTGGCCAAGACT
GTGTCCTATGCCGCCCCACTGGCCACCACCAATGTGAACCATGGACCAGC
TGCCACCACCTACACCCACAATGCTCCAGCTCTGGGCGTCTCCAGCTATG
GAAGCTCCCAGACGGTTCACTATTCCCCCGCAGAGAGTGTGTCGCACATG
AGCTTCGATGGATTCGGAACCCACTGGGGTTTCGCAAGCTTTCTAGACCA
TTCGTTTGGCGCGCGGCCCAGGTAAGTGGTCATAATCATAATCATAATCA
TAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTG
ATTCTCACAATAAAAACGCCCGGCGGCAACGAGCGTTCTGAACAAATTCA
GATGGAGTTCTGAGGTCATTACTGATCTATCACAGAGTCAAGCGAGCTCG
ATATCAAATTACGCCCGCCTGCACTCATTCGCAGTACTGTTGTATTCATT
AAGCATTCTGCCGACTGGAAGCATCCAAAACGCAATGAATGAACTTGAAA
T
UFO11427.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:49:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8541-RA | 956 | CG8541-RA | 50..876 | 7..833 | 4135 | 100 | Plus |
| CG8541-RA | 956 | CG8541-RA | 399..533 | 527..661 | 315 | 82.2 | Plus |
| CG8541-RA | 956 | CG8541-RA | 570..704 | 356..490 | 315 | 82.2 | Plus |
| CG8543-RA | 801 | CG8543-RA | 383..610 | 351..581 | 305 | 76.4 | Plus |
| CG8543-RA | 801 | CG8543-RA | 476..627 | 360..520 | 245 | 77.6 | Plus |
| CG8543-RA | 801 | CG8543-RA | 554..612 | 561..619 | 220 | 91.5 | Plus |
| CG8541-RA | 956 | CG8541-RA | 505..555 | 576..626 | 210 | 94.1 | Plus |
| CG8541-RA | 956 | CG8541-RA | 619..669 | 462..512 | 210 | 94.1 | Plus |
| CG8543-RA | 801 | CG8543-RA | 200..336 | 105..241 | 205 | 76.6 | Plus |
| CG8541-RA | 956 | CG8541-RA | 363..453 | 530..617 | 195 | 82.4 | Plus |
| CG8541-RA | 956 | CG8541-RA | 475..546 | 510..581 | 195 | 84.7 | Plus |
| CG8541-RA | 956 | CG8541-RA | 553..624 | 432..503 | 195 | 84.7 | Plus |
| CG8541-RA | 956 | CG8541-RA | 573..660 | 320..410 | 195 | 82.4 | Plus |
| CG8543-RA | 801 | CG8543-RA | 560..610 | 360..410 | 195 | 92.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:49:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7471608..7472434 | 7..833 | 4135 | 100 | Plus |
| 3L | 28110227 | 3L | 7471957..7472091 | 527..661 | 315 | 82.2 | Plus |
| 3L | 28110227 | 3L | 7472128..7472262 | 356..490 | 315 | 82.2 | Plus |
| 3L | 28110227 | 3L | 7469676..7469734 | 520..462 | 220 | 91.5 | Minus |
| 3L | 28110227 | 3L | 7469691..7469749 | 619..561 | 220 | 91.5 | Minus |
| 3L | 28110227 | 3L | 7472063..7472113 | 576..626 | 210 | 94.1 | Plus |
| 3L | 28110227 | 3L | 7472177..7472227 | 462..512 | 210 | 94.1 | Plus |
| 3L | 28110227 | 3L | 7469967..7470103 | 241..105 | 205 | 76.6 | Minus |
| 3L | 28110227 | 3L | 7469693..7469743 | 410..360 | 195 | 92.2 | Minus |
| 3L | 28110227 | 3L | 7472033..7472104 | 510..581 | 195 | 84.7 | Plus |
| 3L | 28110227 | 3L | 7472111..7472182 | 432..503 | 195 | 84.7 | Plus |
Blast to na_te.dros performed 2014-11-28 02:49:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2774..3019 | 550..303 | 156 | 55.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2772..2854 | 531..449 | 127 | 61.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2751..2854 | 531..428 | 124 | 57.7 | Minus |
UFO11427.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-17 09:45:30 Download gff for
UFO11427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8541-RA | 1..828 | 9..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:28:38 Download gff for
UFO11427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8541-RA | 45..879 | 1..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:39:43 Download gff for
UFO11427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8541-RA | 45..879 | 1..837 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:39:43 Download gff for
UFO11427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7471603..7472437 | 1..837 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:28:38 Download gff for
UFO11427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7464703..7465537 | 1..837 | 99 | == | Plus |
