Clone UFO11428 Report

Search the DGRC for UFO11428

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:114
Well:28
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/Transcriptobst-G-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO11428.5prime Sequence

1156 bp (1036 high quality bases) assembled on 2012-05-17

> UFO11428.5prime
CAGTCGACATGAAGCTATTTGGACTGCTCTGCGTAATGTTAGTACTTCAA
GAAAGTACTCTGGCTGTTGTACAAAACGGATTTGCGTTCAAGACGTCCTT
ATGCGAGGGTAAAAATGGTGGACTCTTGCCCATGTTTGGATCCTGTAAAG
GATATTACGTGTGTGCTGATGGAAACGCTGTGACCGGAACTTGTGAAAAG
AATACGTTGTTTAATCCTTTAACGTTGCACTGCGATGATCCTGACAATGT
GGATTGCATTTTCGATGGCAAGGATAATATTGTTGACGACACGTCAAGTT
CTGAAAGCGACGAAGACGATGATGAGGAAATGGCCAAAACTGATCCTCCC
GTTACTGTCAAAGCGACGAAAAAGCCGCGTCCTACAACCCTTGACAAAAT
GTGTGCTGGCAAGAAGGATGGAGTGATGCTTACAAAGAACGGGTCCTGCC
AGGAATATTATGTCTGCAAAGCAAAAAAGCCCCATCTGCGCTCTTGTCCT
GACAAACAACATTTTAGTCCAACTCGTCGCATTTGCATGAAGGCCTCAGA
AGCCAAGTGTTCGGGTGGAACCCGAGAAAATAAAGAATCAGATGGTCCTG
CCACCACGGGAGGAGTGTGTTCAGATGAAAAGGAAAACTCTCTTGTTGCT
CATCGCAGCGATTGTGGCAAGTTTATGCTCTGCAGCAACATGATGTTTTT
GGTAATGGACTGCCCAACTGGCCTGCATTTCAATATAGCCACATCACGAT
GCGATTATCCCAAATTGCAAAATGCCAGACGAAGCTAAATGAAAGCAAAT
CCAAGTCAAGAAACCTGTGCGCAAGTCAAAAAACGTCGATTCCAGCTTTC
TAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAAT
CATAATCATATCATATTCACAACTAGCCTAGGAGATCCTGGTCATGACTA
GTGCTTGGATCTCACCAATAAAAAACGCCCGGCGGCACCGAGCGTTCTTG
AACAATTCAGATGGAGTTCTGATGTCATTACTGGATCTTTTCACAGGGGT
TCAGCGAGCCTCGATATCAATTACGGCCCCGGCCTGCCACTCCATTCGCA
GTACTTTTTGTATTTCCATTAGCAATTCGCGACTGAAGAGCATCAAACGG
GCCATG

UFO11428.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:49:17
Subject Length Description Subject Range Query Range Score Percent Strand
obst-G-RA 962 CG9781-RA 25..861 9..842 4110 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:49:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11952412..11953176 833..71 3710 99.6 Minus
3L 28110227 3L 11953228..11953293 74..9 330 100 Minus
Blast to na_te.dros performed 2014-11-28 02:49:16
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy12 10218 gypsy12 GYPSY12 10218bp 1433..1467 1120..1086 112 80 Minus
gypsy12 10218 gypsy12 GYPSY12 10218bp 9315..9349 1120..1086 112 80 Minus

UFO11428.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-17 09:45:30 Download gff for UFO11428.5prime
Subject Subject Range Query Range Percent Splice Strand
obst-G-RA 1..840 9..845 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:28:40 Download gff for UFO11428.5prime
Subject Subject Range Query Range Percent Splice Strand
obst-G-RA 17..866 1..847 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:39:44 Download gff for UFO11428.5prime
Subject Subject Range Query Range Percent Splice Strand
obst-G-RA 17..866 1..847 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:39:44 Download gff for UFO11428.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11952397..11953172 75..847 99 <- Minus
3L 11953228..11953299 1..74 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:28:40 Download gff for UFO11428.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11945497..11946272 75..847 99 <- Minus
arm_3L 11946328..11946399 1..74 94   Minus