UFO11431.5prime Sequence
1106 bp (1006 high quality bases) assembled on 2012-05-17
> UFO11431.5prime
CAGTCGACATGTCACGATCTCCCTGCTGGATTTTCCTTTTATATTTGGTC
CTTATCATTTTCACTTTTACTTTCGCACAAAACTATTGCGATCCAGAACT
GTGTCCCAGTGGAAGACACGTGGCCTGCCAAAACAGCGGTCGCTTTGTGA
GCGGTTGCAGCGGCGAGTTTGTCCAAGTGGATGCCCACATCCCGCTGATT
CTCCAGCTGCACAACGAACGCCGCAACCTGATCGCTGGCGGTGGAGTTAG
TGGCTTCCCCAGTGCCGTCCAAATGGCCACAATGTCCTGGGACACGACAC
TGGCCCAACTGGCCGCCTACAATGCGCTGCAGTGCCGCATGGCGCACGAC
GAATGCCGCAACACGAACACGTATCGCTATGCCGGCCAGAATCTGAGCAT
TCTCTTCACCCGAAGTGTGGATGTGGCGGTCTTCCTGCGCCAACGGATCG
CCGCCTGGTTCGATGAGAATCGGGATGCGACCAGTGGCGACATGGAGGAC
TATCAGATGCGCGGTGGACCAGCAATTGGCCACTTCACCACCATGGTCAA
CGAGCGAAATAACCGAGTGGGTTGTGCGATTGCTCGATTTACGGACGCCA
ACAATGTGCAGGCCACCCTGCTGGCTTGCAACTACGCGGTCACCAATGTG
GTGAATAACCCGGTTTACAGGGCGGGAACCGCTGCCTCGGAATGCACTAC
AGGACGAAACTCCAACTATCCGAATCTCTGCTCGCCCAACGAGGTGTACA
ACTATAATCAATGGTCGGGAGCAAGCTTTCTAGACCATTCGTTTGGCGCG
CGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCA
CAACTAGCCTAGGAGATCCTGTCATGACTAGTGCTTGATTCTCACCAATA
AAAACGCCCGGCGCACCGAGCGTTCTGAACAAATCCAGATGAGTTCTGAG
TCATTACTGATCTATCACAGAGTCAGCGAGCTCGATATCAATTACGCCCC
GCCCTGCCACTCATCGCAGTACTGTTTATTCATTAGCATTTTGCGACTGA
GCATCCAGACGCATGATGACCTGATCGCCAGCGCATCAGACTGTCCCTGC
TTAAAT
UFO11431.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:49:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32679-RA | 884 | CG32679-RA | 12..773 | 9..770 | 3810 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:49:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10366818..10367197 | 520..141 | 1900 | 100 | Minus |
| X | 23542271 | X | 10366513..10366762 | 770..521 | 1250 | 100 | Minus |
| X | 23542271 | X | 10367330..10367461 | 140..9 | 660 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:49:26 has no hits.
UFO11431.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-17 09:45:32 Download gff for
UFO11431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32679-RA | 1..765 | 9..774 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:28:48 Download gff for
UFO11431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32679-RA | 12..777 | 9..775 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:39:51 Download gff for
UFO11431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32679-RA | 12..777 | 9..775 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:39:51 Download gff for
UFO11431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10366509..10366762 | 521..775 | 99 | <- | Minus |
| X | 10366818..10367197 | 141..520 | 100 | <- | Minus |
| X | 10367330..10367461 | 9..140 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:28:48 Download gff for
UFO11431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10260542..10260795 | 521..775 | 99 | <- | Minus |
| arm_X | 10260851..10261230 | 141..520 | 100 | <- | Minus |
| arm_X | 10261363..10261494 | 9..140 | 100 | | Minus |
