UFO11433.5prime Sequence
1175 bp (1063 high quality bases) assembled on 2012-05-17
> UFO11433.5prime
ATAGGGAATTGGGAATTCGTTAACAGATCTGCGGCCGCATAATTGGATCA
TACATTATACGAAGTTATCAGTCGACATGTCGAAAAAGTATCCGAACCCG
GTGACCAAGCACTTCGTCTATAGCGAAAGGACGCGAAAAAGTACCTGCAA
AAGGTGCCACTTCGATATGGCAGGTCGCCACTCCGAGAATCTGATGCGGC
ATTTGAAACGTAAGCATGAGGATGCCTACAAAAGTGTTCTGGACGAGAAG
CGAGAAATCCGTGCGGCACTTGCCCAGCAGCAGGCCAACAAAGATGCAGT
CAATCCGACGAAGAAAGTCTTGGCCTCTAAGTATCCTCTATATCCAACGA
CACGAAAGCAGTCTTTCATTACCGAGGACGACGACTCCCAGCACAGTGGC
ATGGAAACCATGGTGACGTTGAATGGTGAAGAGACCGGGGACGTAGATAA
CAAGAACAACGCTACAGTCAGTCAGTTCGAGGGCGTTTTTATTGGAAAAT
CGGAGATACCTGACGAGGAGTATCAGTGGAAAAACTCTGCAAATATGGAA
CTGAAGGCCGTCGATGTTTCTGTGGCCCAGACTACTAACGAATCCAGCGT
CTGTGTGGCTCCCACTTCCACCACTGCTCGTGCCAAGTCTCCAGCTCGAG
CCGCATCTTCTGCGGCTGCTTTAGACCAATCTCCAAGCGACGAGGACTAC
TTCCTCCGCTATCTGGGCAGCAAATTAGGCAAATACTCTGCCCGCACAAG
GAACACAGTCCAGTTTCACATTAATCGCATACTGTACAAGGCGGACATGG
GTCACTTTGAGGAAACAGATTCCAGGATGGGCGATGACGACTACGCCTCC
CCGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGG
TCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGAT
CCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGG
CACCGAGCGTTCTGACAAATCCAGATGGAGTTCTGAGGTCATTACTGGAT
CTATCAACAGGAGTCAGCGAGCTCGATATTCAATTACGCCCCCGCCCTGC
CACTCATCGCAGTACTGTGTATCATTAAGCATTCTGCGACTGAGCATCCA
AACCGCATGATGACTGATCGCCAGC
UFO11433.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:49:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14050-RB | 1385 | CG14050-RB | 528..1304 | 77..853 | 3885 | 100 | Plus |
| CG14050-RA | 952 | CG14050-RA | 95..871 | 77..853 | 3885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:49:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2324829..2325307 | 853..375 | 2395 | 100 | Minus |
| X | 23542271 | X | 2325390..2325690 | 377..77 | 1505 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:49:33 has no hits.
UFO11433.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-17 09:45:34 Download gff for
UFO11433.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14050-RA | 1..780 | 77..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:28:53 Download gff for
UFO11433.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14050-RA | 95..875 | 77..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:39:54 Download gff for
UFO11433.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14050-RA | 95..875 | 77..859 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:39:54 Download gff for
UFO11433.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2324825..2325305 | 377..859 | 99 | <- | Minus |
| X | 2325391..2325690 | 77..376 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:28:53 Download gff for
UFO11433.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2218858..2219338 | 377..859 | 99 | <- | Minus |
| arm_X | 2219424..2219723 | 77..376 | 100 | | Minus |
