UFO11436.5prime Sequence
1140 bp (1023 high quality bases) assembled on 2012-05-17
> UFO11436.5prime
CAGTCGACATGCTCAGACAACTGACACGGTCAATGGGCCCGACCTCGCGG
CTGCTTAAGCAGGTCAACTATGGCACAAATGCCCCAGCTGGCACCCACAT
TCCCGTGACCAAGGCCCTGGAAATTGGACAGTGGGAGGAAAAGCTCAAGG
CCGCCGGCGTCGAGGACAGGAAGTTCAACGTGAAATGCATCGTGTCGCAT
GTCCTGAAGCAGAAGTTTAGTTCGGTTCCTGACTCATTTGACCAGCTGCA
GCTAAATCCCGGCCAGCTGGCGGATTTCGAGCGCTTCCTGGAGGCCCGTT
GTGCCCGCATGCCGTTGCAGCACATCATTGGCGAGTGGGACTTCATGGAC
ATTACGCTGAAGACATCGCCGTCGGTCTTCATTCCACGCCCCGAAACGGA
GGAGTTTATGCGCCTGGTGATCGATGATCACAAGAACGCAAAGCACGTCG
ATCTTTTGGAGGTGGGCTGCGGCTCGGGCGCCATGTCCTTGTCCATGCTA
CACAGTCTGCCGCAGGTGGTGGCCACTGCCATTGAGCGTAGCAAGGCGGC
AACCGTGCTGGCTGCGGAGAATGCCAAAATGCTGGGGCTGCTGAATCGAT
TTGAGGTACACAACCACACCATGGAGGAGGACAAGTACCTGCCGGAGGCG
CTGAAGGACAAGAAGTACGATTTGATCATCTCCAATCCTCCGTATGTGAA
AACTGAGGAGTTTCAGTTTCTGCATCCCGAAGTCGTGGTGTATGAGAACC
TTAATGCCCTGCACGGTGGGTCCGATGGATTGAGGGTGGCTCGACTGGTC
TTCGACTTGGCATGCCGGCACCTGCGTCCCGGTGGAAGCTCTGGCTGGAA
CTGGGCAACGACCACCCGCCGATGGTGAGACCATTATGAATCTGAAGTAC
GAGGGCCGGCTTAGTTCATCGCCGGTTACAGTGACCAGTATCAGCGCGAG
AGATTCGTTCAGATCGAAGAAGGTCGCAAGCTTTTCTAGACATTCGTTTG
CGCGCGGGCCAGGTAGTGGTCATATTCATATCATATCATATCATATCACA
CTAGCTAAGAGATCTGGGTCATGACTATGCTGCATTCTCCACAATAAAAA
CGCCGGGCGGCACCGAGCGTCTGACAAATCCCGATGGAGT
UFO11436.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:49:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9531-RB | 1221 | CG9531-RB | 91..1059 | 9..975 | 4645 | 98.9 | Plus |
| CG9531-RA | 1369 | CG9531-RA | 91..1059 | 9..975 | 4645 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:49:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6466816..6467339 | 742..219 | 2605 | 99.8 | Minus |
| 2L | 23513712 | 2L | 6467399..6467608 | 218..9 | 1050 | 100 | Minus |
| 2L | 23513712 | 2L | 6466534..6466764 | 967..740 | 915 | 96.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:49:02 has no hits.
UFO11436.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-17 09:45:28 Download gff for
UFO11436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9531-RA | 93..1066 | 9..981 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:28:32 Download gff for
UFO11436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9531-RA | 91..1064 | 9..981 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:39:38 Download gff for
UFO11436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9531-RA | 91..1064 | 9..981 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:39:38 Download gff for
UFO11436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6466534..6466764 | 740..967 | 96 | <- | Minus |
| 2L | 6466819..6467339 | 219..739 | 99 | <- | Minus |
| 2L | 6467399..6467608 | 9..218 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:28:32 Download gff for
UFO11436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6466534..6466764 | 740..967 | 96 | <- | Minus |
| arm_2L | 6466819..6467339 | 219..739 | 99 | <- | Minus |
| arm_2L | 6467399..6467608 | 9..218 | 100 | | Minus |
