UFO11438.5prime Sequence
1122 bp (1015 high quality bases) assembled on 2012-05-17
> UFO11438.5prime
CAGTCGACATGGCGGAAAACGTAGATTCAGCACAATTTAATGCGGATGAG
GTGGATGCCCCAGCTTGGCTAAATGCGGAACTTATCGAGGGCGCTCTAAG
AGCTTATGAAAAGGATCCTGAATTGCATGTAACTGATTTGAAAATTAGTC
CTGCGACTCTGCAGGGAGATCATTATGCCAGCGTCATGTTCCGAGCTGTT
TCCCACTACTCCACCGCCAAGGGGAATTTCTCCAAGGCACTGATAGTTAA
AACAATGCCGGAACAGGAAGGTCACAAAAAGGATATGCTGTCAAATTCGC
CGATATTCAAAACGGAGATCTTAATGTACAGCAAAGCTCTTCCAGAGCTC
GAGAGAATTCTCCGGGAGGCAGGGGATACTACCAAGCTCTATGCGCCTTG
TATCTATCACAGCTTGGAACCTCATCAGGTGATGATATTCGAGGATCTGG
TGCCACAGGGGTACACCGTCATCCGAGATCGTTATCCTAATAAAGAAGAA
CTTCAGAAAGCCTTCTTCAAGTTGGCAAAGTGGCATGCAGCCAGCATGAA
AGTTTTAAATGAGCGACCTGACTTTCTTAAGGAATTTAAGTATGGGTTAT
GGGGCATGCCCAACTTTCTGAACGATTCTATAGTGACAACTGGAGTACCC
TGTTTCCTGGAAATGTTAGACAAGGTTCCGGAACTCACGAAATATAAGCC
GTATTTCGAAAAAATAAAGGATAACTACATTCAGCAGATGAGTGCAGTCA
TGGAAGAATATCGCACTAATCCGAAGCCAAATAGGTACTACGTGCTGTGT
CACGGGGATTTTCATGGGCGCAACATGATGTTTAGGTATAACAAGGAAAC
AGGGTCTTTCGAGGACGTAATGCTGGTGGATTTCCAGATCAGTAATGTTT
GCCCCCTTTCATTGACCTAATTTACTCCATCTTCATGGTATGGATACGAG
ATCGTTGGGATCTTGGAAAGGAATATATCATTATATTTCTCTGTCTGGCG
GACACCTCTGAAAAAATAGCTCAAAGGTGAAATGCCACTCAGACGGATGT
GGGAGCATATCATGGCCAATCGATACGATCTCATGATGACCACGCTTCTA
GCCTGTGCTGCATGAATACGAA
UFO11438.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:49:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13658-RB | 1334 | CG13658-RB | 12..1147 | 9..1122 | 5005 | 97.5 | Plus |
| CG11893-RA | 1415 | CG11893-RA | 45..862 | 15..832 | 635 | 72.8 | Plus |
| CG31104-RA | 1382 | CG31104-RA | 208..646 | 162..600 | 605 | 76.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:49:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25287485..25288039 | 9..563 | 2775 | 100 | Plus |
| 3R | 32079331 | 3R | 25288096..25288580 | 562..1037 | 1945 | 96.3 | Plus |
| 3R | 32079331 | 3R | 25285680..25285997 | 162..479 | 555 | 78.3 | Plus |
| 3R | 32079331 | 3R | 25289933..25290750 | 15..832 | 520 | 70.9 | Plus |
| 3R | 32079331 | 3R | 25283844..25284164 | 162..482 | 300 | 72.9 | Plus |
| 3R | 32079331 | 3R | 25304478..25304655 | 273..450 | 185 | 73.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:49:44 has no hits.
UFO11438.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-17 09:45:36 Download gff for
UFO11438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13658-RB | 6..1147 | 2..1122 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:29:00 Download gff for
UFO11438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13658-RB | 6..1147 | 2..1122 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:40:00 Download gff for
UFO11438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13658-RB | 6..1147 | 2..1122 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:40:00 Download gff for
UFO11438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25287479..25288039 | 2..563 | 99 | -> | Plus |
| 3R | 25288098..25288626 | 564..1077 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:29:00 Download gff for
UFO11438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21113201..21113761 | 2..563 | 99 | -> | Plus |
| arm_3R | 21113820..21114348 | 564..1077 | 96 | -> | Plus |
