UFO11439.5prime Sequence
1108 bp (985 high quality bases) assembled on 2012-05-17
> UFO11439.5prime
CAGTCGACATGAGCGAGCCCAGTGAATCCGGCGATCCCAAGCCTCACAAG
ACTGCCGAGCACCAAATTGGGGATCCTCCCCAAAAAGAGGCGGCAGCTGA
TTTCGAGGCAGCCATCGATGCCGCTGGCTTTGGAATGTTCAACATCCTCC
TGCTGGTGGCCGCCGTGCCAGCGGCCATGGGCACCGTCTACGAGACCTCC
ACGATGTCCTACATCCTGCCCAGCGCCGAGTGTGATCTTAAGCTGAGCCT
CCTGGACAAGGGCATCCTGAATGCCATTACCTATGCGGGCATGATCAGTT
CGGCGGTGCTTTGGGGCTACTTGGCCGACATCAAGGGCAGAAGAAACCTC
CTGATTGTGGGCTATGCCGCCGATACGATATGCGTTTTGGGCGGAGCACT
CAGTCAAAGTAGGATCCAACTGATGGTTTTTAAATACCTTGGAGGCTTTT
GTATGAGTGGCCCCTTTGCCGTTCTTATGACCTATTTGACGGAACTCCAT
GGACGGAAGCATCGACAGCGTATCATGATGATGGTGGGCATCATGTTCTC
AATTGCAACGCTAACGCTACCGGGACTGGCCATGCTGATATTGCCCGAGA
CGTGGAACATTCAGATCTGGACTTTGTCGTTAACATCCTGGCAGTTTTTC
GTCGCCGTCACCGCACTTCCCAGTCTTCTGAGCTTTGTGCTTTTCTTTTT
CTTCCCGGAGAGTCCCAAGTTTCTCATGTCCAATGGGCGCAACCGGGAAG
CCCTGGATGCCTTCAAGTTCATGTATCACCTGAACTCGAGAAAACCCAAG
GACTCGTTTCCAATCAAATTGCTGGCCAATGAAGTAATTGTTCCGGTAAA
AAAGCACGCGAAGGATGAAACAATTTCCGACTGAGCTTAAACTTCCGACG
GAGTGCGTCGAGTTCAGATCCAGAGAATCAGACTCGAAAAGAGCTCCTGC
GTCGGGCTTCACGCAGCTTCGTCCTTTTTCACAAACCTACTGGGCTATCC
TTTGGTGTATCTCTCACTTTGCTGCTCTGGACAAAACACATGCAATTGTG
CTGCCCAACCTGTGCATCCATCACGAGTTACGAAACTTGAGTGAGCGGAA
TCCAATCG
UFO11439.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:49:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3690-RB | 2540 | CG3690-RB | 19..1131 | 9..1099 | 4800 | 97 | Plus |
| CG3690-RA | 2073 | CG3690-RA | 19..1131 | 9..1099 | 4800 | 97 | Plus |
| CG14691-RC | 1675 | CG14691-RC | 230..329 | 217..316 | 245 | 83 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:49:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 951440..951882 | 451..9 | 2215 | 100 | Minus |
| X | 23542271 | X | 951197..951376 | 630..451 | 900 | 100 | Minus |
| X | 23542271 | X | 950658..950837 | 812..633 | 885 | 99.4 | Minus |
| X | 23542271 | X | 950433..950599 | 974..813 | 490 | 95.8 | Minus |
| 3R | 32079331 | 3R | 10755306..10755405 | 316..217 | 245 | 83 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:49:48 has no hits.
UFO11439.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-17 09:45:36 Download gff for
UFO11439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3690-RA | 1..996 | 9..995 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:29:02 Download gff for
UFO11439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3690-RA | 8..1014 | 1..995 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:40:02 Download gff for
UFO11439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3690-RA | 8..1014 | 1..995 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:40:02 Download gff for
UFO11439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 950408..950599 | 813..995 | 93 | <- | Minus |
| X | 950658..950839 | 631..812 | 98 | <- | Minus |
| X | 951197..951375 | 452..630 | 100 | <- | Minus |
| X | 951440..951886 | 1..451 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:29:02 Download gff for
UFO11439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 844441..844632 | 813..995 | 93 | <- | Minus |
| arm_X | 844691..844872 | 631..812 | 98 | <- | Minus |
| arm_X | 845230..845408 | 452..630 | 100 | <- | Minus |
| arm_X | 845473..845919 | 1..451 | 99 | | Minus |
